Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FMO entry

There is 1 chain in PDB entry 9FMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 446MET 807
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9FMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
502 523Right-handed alpha
Helix 2
AA2
A
558 566Right-handed alpha
Helix 3
AA3
A
572 595Right-handed alpha
Helix 4
AA4
A
602 604Right-handed 310
Helix 5
AA5
A
648 652Right-handed 310
Helix 6
AA6
A
653 659Right-handed alpha
Helix 7
AA7
A
664 681Right-handed alpha
Helix 8
AA8
A
689 702Right-handed alpha
Helix 9
AA9
A
721 732Right-handed alpha
Helix 10
AB1
A
742 746Right-handed 310
Helix 11
AB2
A
754 765Right-handed alpha
Helix 12
AB3
A
767 772Right-handed alpha
Helix 13
AB4
A
773 775Right-handed 310
Helix 14
AB5
A
776 785Right-handed alpha
Helix 15
AB6
A
790 794Right-handed 310
Helix 16
AB7
A
796 802Right-handed alpha
Helix 17
AB8
A
803 807Right-handed 310
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There are 4 sheets in PDB entry 9FMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
468 477anti-parallel
Strand 3
A
480 487anti-parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
546 553anti-parallel
Strand 6
A
533 540anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
634 635anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 608first strand
Strand 2
A
625 627anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 735first strand
Strand 2
A
738 739anti-parallel
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