Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FMP entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9FMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 449TYR 809
B
 TYR 451GLN 682
B
 LEU 684SER 808
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9FMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
502 523Right-handed alpha
Helix 2
AA2
A
558 566Right-handed alpha
Helix 3
AA3
A
572 595Right-handed alpha
Helix 4
AA4
A
602 604Right-handed 310
Helix 5
AA5
A
648 652Right-handed 310
Helix 6
AA6
A
653 659Right-handed alpha
Helix 7
AA7
A
664 681Right-handed alpha
Helix 8
AA8
A
689 701Right-handed alpha
Helix 9
AA9
A
721 732Right-handed alpha
Helix 10
AB1
A
752 765Right-handed alpha
Helix 11
AB2
A
767 772Right-handed alpha
Helix 12
AB3
A
773 775Right-handed 310
Helix 13
AB4
A
776 785Right-handed alpha
Helix 14
AB5
A
790 794Right-handed 310
Helix 15
AB6
A
796 801Right-handed alpha
Helix 16
AB7
A
803 808Right-handed alpha
Helix 17
AB8
B
502 523Right-handed alpha
Helix 18
AB9
B
558 566Right-handed alpha
Helix 19
AC1
B
572 595Right-handed alpha
Helix 20
AC2
B
610 613Right-handed 310
Helix 21
AC3
B
648 652Right-handed 310
Helix 22
AC4
B
653 659Right-handed alpha
Helix 23
AC5
B
664 681Right-handed alpha
Helix 24
AC6
B
689 702Right-handed alpha
Helix 25
AC7
B
721 732Right-handed alpha
Helix 26
AC8
B
752 765Right-handed alpha
Helix 27
AC9
B
767 772Right-handed alpha
Helix 28
AD1
B
773 775Right-handed 310
Helix 29
AD2
B
776 785Right-handed alpha
Helix 30
AD3
B
790 794Right-handed 310
Helix 31
AD4
B
796 802Right-handed alpha
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There are 8 sheets in PDB entry 9FMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
468 477anti-parallel
Strand 3
A
480 487anti-parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
546 553anti-parallel
Strand 6
A
533 540anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
634 635anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 608first strand
Strand 2
A
625 627anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 735first strand
Strand 2
A
738 739anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
456 457first strand
Strand 2
B
468 476anti-parallel
Strand 3
B
480 487anti-parallel
Strand 4
B
492 499anti-parallel
Strand 5
B
546 553anti-parallel
Strand 6
B
533 540anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
596 597first strand
Strand 2
B
634 635anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
606 608first strand
Strand 2
B
625 627anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
734 735first strand
Strand 2
B
738 739anti-parallel
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