Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FMQ entry

There is 1 chain in PDB entry 9FMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 453SER 816
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9FMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
502 523Right-handed alpha
Helix 2
AA2
A
558 566Right-handed alpha
Helix 3
AA3
A
572 595Right-handed alpha
Helix 4
AA4
A
602 604Right-handed 310
Helix 5
AA5
A
656 660Right-handed 310
Helix 6
AA6
A
661 667Right-handed alpha
Helix 7
AA7
A
672 689Right-handed alpha
Helix 8
AA8
A
697 710Right-handed alpha
Helix 9
AA9
A
729 740Right-handed alpha
Helix 10
AB1
A
760 773Right-handed alpha
Helix 11
AB2
A
775 780Right-handed alpha
Helix 12
AB3
A
781 783Right-handed 310
Helix 13
AB4
A
784 793Right-handed alpha
Helix 14
AB5
A
798 802Right-handed 310
Helix 15
AB6
A
804 809Right-handed alpha
Helix 16
AB7
A
810 815Right-handed 310
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There are 4 sheets in PDB entry 9FMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
456 457first strand
Strand 2
A
468 477anti-parallel
Strand 3
A
480 487anti-parallel
Strand 4
A
492 499anti-parallel
Strand 5
A
546 552anti-parallel
Strand 6
A
533 540anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
642 643anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 614first strand
Strand 2
A
627 635anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 743first strand
Strand 2
A
746 747anti-parallel
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