Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FMS entry

There are 3 chains in PDB entry 9FMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1SER 931
D
 ASP 6ASP 18
A
 MET 1LYS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9FMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 14Right-handed alpha
Helix 2
AA2
B
35 39Right-handed 310
Helix 3
AA3
B
54 63Right-handed alpha
Helix 4
AA4
B
72 92Right-handed alpha
Helix 5
AA5
B
106 135Right-handed alpha
Helix 6
AA6
B
156 160Right-handed 310
Helix 7
AA7
B
166 185Right-handed alpha
Helix 8
AA8
B
186 189Right-handed 310
Helix 9
AA9
B
203 216Right-handed alpha
Helix 10
AB1
B
235 243Right-handed alpha
Helix 11
AB2
B
256 261Right-handed alpha
Helix 12
AB3
B
283 287Right-handed 310
Helix 13
AB4
B
294 305Right-handed alpha
Helix 14
AB5
B
315 330Right-handed alpha
Helix 15
AB6
B
343 359Right-handed alpha
Helix 16
AB7
B
360 362Right-handed 310
Helix 17
AB8
B
373 407Right-handed alpha
Helix 18
AB9
B
593 597Right-handed 310
Helix 19
AC1
B
603 614Right-handed alpha
Helix 20
AC2
B
619 645Right-handed alpha
Helix 21
AC3
B
660 664Right-handed 310
Helix 22
AC4
B
681 688Right-handed alpha
Helix 23
AC5
B
691 698Right-handed 310
Helix 24
AC6
B
699 708Right-handed alpha
Helix 25
AC7
B
713 717Right-handed 310
Helix 26
AC8
B
742 752Right-handed alpha
Helix 27
AC9
B
753 757Right-handed 310
Helix 28
AD1
B
758 763Right-handed alpha
Helix 29
AD2
B
780 789Right-handed alpha
Helix 30
AD3
B
838 842Right-handed 310
Helix 31
AD4
B
873 882Right-handed alpha
Helix 32
AD5
B
894 899Right-handed alpha
Helix 33
AD6
B
900 902Right-handed 310
Helix 34
AD7
B
920 931Right-handed alpha
Helix 35
AD8
A
49 54Right-handed 310
Helix 36
AD9
A
62 66Right-handed 310
Helix 37
AE1
A
70 73Right-handed 310
Helix 38
AE2
A
79 92Right-handed alpha
Helix 39
AE3
A
105 113Right-handed alpha
Helix 40
AE4
A
114 116Right-handed 310
Helix 41
AE5
A
118 123Right-handed alpha
Helix 42
AE6
A
158 175Right-handed alpha
Helix 43
AE7
A
180 184Right-handed 310
Helix 44
AE8
A
185 191Right-handed alpha
Helix 45
AE9
A
192 194Right-handed 310
Helix 46
AF1
A
235 237Right-handed 310
Helix 47
AF2
A
250 270Right-handed alpha
Helix 48
AF3
A
296 306Right-handed alpha
Helix 49
AF4
A
306 311Right-handed alpha
Helix 50
AF5
A
311 330Right-handed alpha
Helix 51
AF6
A
365 372Right-handed alpha
Helix 52
AF7
A
377 386Right-handed alpha
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There are 7 sheets in PDB entry 9FMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
289 293anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
227 230parallel
Strand 5
B
47 53parallel
Strand 6
B
93 100parallel
Strand 7
B
192 196parallel
Strand 8
B
771 775anti-parallel
Strand 9
B
844 849anti-parallel
Strand 10
B
811 815anti-parallel
Strand 11
B
800 802anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 368first strand
Strand 2
B
371 372anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 591first strand
Strand 2
B
723 724parallel
Strand 3
B
735 736anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
A
17 29parallel
Strand 3
A
203 211anti-parallel
Strand 4
A
214 221anti-parallel
Strand 5
A
101 104parallel
Strand 6
A
135 139parallel
Strand 7
A
127 131anti-parallel
Strand 8
A
344 350anti-parallel
Strand 9
A
353 358anti-parallel
Strand 10
A
4 8anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
A
17 29parallel
Strand 3
A
35 37anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
44 46anti-parallel
Strand 3
A
224 225parallel
Strand 4
A
239 243anti-parallel
Strand 5
A
275 281parallel
Strand 6
A
287 294anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
198 199parallel
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