Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FMU entry

There are 5 chains in PDB entry 9FMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	ARG 141
B	VAL 1	HIS 146
C	VAL 148	GLU 405
D	GLY 154	THR 1029
E	LYS 260	ASP 926

There are 61 helices in PDB entry 9FMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	16	Right-handed alpha
Helix 2	AA2	A	17	19	Right-handed 310
Helix 3	AA3	A	20	36	Right-handed alpha
Helix 4	AA4	A	37	43	Right-handed 310
Helix 5	AA5	A	52	72	Right-handed alpha
Helix 6	AA6	A	75	89	Right-handed alpha
Helix 7	AA7	A	95	113	Right-handed alpha
Helix 8	AA8	A	114	117	Right-handed 310
Helix 9	AA9	A	118	138	Right-handed alpha
Helix 10	AB1	B	4	18	Right-handed alpha
Helix 11	AB2	B	22	35	Right-handed alpha
Helix 12	AB3	B	38	43	Right-handed alpha
Helix 13	AB4	B	50	57	Right-handed alpha
Helix 14	AB5	B	57	77	Right-handed alpha
Helix 15	AB6	B	80	95	Right-handed alpha
Helix 16	AB7	B	100	119	Right-handed alpha
Helix 17	AB8	B	120	122	Right-handed 310
Helix 18	AB9	B	123	142	Right-handed alpha
Helix 19	AC1	C	200	205	Right-handed alpha
Helix 20	AC2	C	213	218	Right-handed alpha
Helix 21	AC3	C	219	221	Right-handed 310
Helix 22	AC4	C	305	314	Right-handed alpha
Helix 23	AC5	C	318	322	Right-handed 310
Helix 24	AC6	C	395	405	Right-handed alpha
Helix 25	AC7	D	189	200	Right-handed alpha
Helix 26	AC8	D	210	215	Right-handed alpha
Helix 27	AC9	D	234	238	Right-handed 310
Helix 28	AD1	D	249	253	Right-handed 310
Helix 29	AD2	D	259	263	Right-handed alpha
Helix 30	AD3	D	296	308	Right-handed alpha
Helix 31	AD4	D	341	345	Right-handed 310
Helix 32	AD5	D	403	414	Right-handed alpha
Helix 33	AD6	D	448	452	Right-handed 310
Helix 34	AD7	D	504	507	Right-handed 310
Helix 35	AD8	D	508	519	Right-handed alpha
Helix 36	AD9	D	553	557	Right-handed 310
Helix 37	AE1	D	568	572	Right-handed 310
Helix 38	AE2	D	613	624	Right-handed alpha
Helix 39	AE3	D	658	662	Right-handed 310
Helix 40	AE4	D	856	867	Right-handed alpha
Helix 41	AE5	D	901	905	Right-handed 310
Helix 42	AE6	D	959	970	Right-handed alpha
Helix 43	AE7	D	1004	1008	Right-handed 310
Helix 44	AE8	D	1019	1023	Right-handed 310
Helix 45	AE9	E	296	307	Right-handed alpha
Helix 46	AF1	E	341	345	Right-handed 310
Helix 47	AF2	E	356	360	Right-handed 310
Helix 48	AF3	E	403	414	Right-handed alpha
Helix 49	AF4	E	448	452	Right-handed 310
Helix 50	AF5	E	503	507	Right-handed 310
Helix 51	AF6	E	508	519	Right-handed alpha
Helix 52	AF7	E	553	557	Right-handed 310
Helix 53	AF8	E	568	572	Right-handed 310
Helix 54	AF9	E	613	624	Right-handed alpha
Helix 55	AG1	E	658	662	Right-handed 310
Helix 56	AG2	E	749	760	Right-handed alpha
Helix 57	AG3	E	794	798	Right-handed 310
Helix 58	AG4	E	809	813	Right-handed 310
Helix 59	AG5	E	856	867	Right-handed alpha
Helix 60	AG6	E	901	905	Right-handed 310
Helix 61	AG7	E	916	920	Right-handed 310

There are 33 sheets in PDB entry 9FMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	222	225	anti-parallel
Strand 3	C	176	180	anti-parallel
Strand 4	C	186	191	anti-parallel
Strand 5	C	196	199	anti-parallel
Strand 6	C	248	251	anti-parallel
Strand 7	C	235	238	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	302	first strand
Strand 2	C	278	283	anti-parallel
Strand 3	C	358	363	anti-parallel
Strand 4	C	368	377	anti-parallel
Strand 5	C	386	391	anti-parallel
Strand 6	C	338	342	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	166	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	179	181	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	166	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	255	258	anti-parallel
Strand 4	D	205	209	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	269	first strand
Strand 2	D	276	283	anti-parallel
Strand 3	D	362	366	anti-parallel
Strand 4	D	313	316	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	269	first strand
Strand 2	D	276	283	anti-parallel
Strand 3	D	286	290	anti-parallel
Strand 4	D	328	330	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	380	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	469	472	anti-parallel
Strand 4	D	419	421	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	380	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	393	397	anti-parallel
Strand 4	D	436	438	parallel
Strand 5	D	456	457	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	482	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	574	577	anti-parallel
Strand 4	D	524	528	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	482	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	498	502	anti-parallel
Strand 4	D	540	541	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	559	561	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	594	600	anti-parallel
Strand 3	D	679	682	anti-parallel
Strand 4	D	629	631	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	594	600	anti-parallel
Strand 3	D	603	607	anti-parallel
Strand 4	D	645	646	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	664	665	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	827	first strand
Strand 2	D	836	843	anti-parallel
Strand 3	D	846	849	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	827	first strand
Strand 2	D	836	843	anti-parallel
Strand 3	D	922	925	anti-parallel
Strand 4	D	873	876	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	887	888	first strand
Strand 2	D	913	914	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	1025	1028	anti-parallel
Strand 4	D	975	979	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	949	953	anti-parallel
Strand 4	D	991	993	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	269	first strand
Strand 2	E	276	283	anti-parallel
Strand 3	E	286	289	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	264	269	first strand
Strand 2	E	276	283	anti-parallel
Strand 3	E	362	366	anti-parallel
Strand 4	E	313	316	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	380	first strand
Strand 2	E	383	390	anti-parallel
Strand 3	E	469	472	anti-parallel
Strand 4	E	419	421	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	372	380	first strand
Strand 2	E	383	390	anti-parallel
Strand 3	E	393	397	anti-parallel
Strand 4	E	436	438	parallel
Strand 5	E	456	457	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	476	482	first strand
Strand 2	E	488	495	anti-parallel
Strand 3	E	574	577	anti-parallel
Strand 4	E	524	528	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	476	482	first strand
Strand 2	E	488	495	anti-parallel
Strand 3	E	498	501	anti-parallel
Strand 4	E	539	540	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	543	545	first strand
Strand 2	E	559	561	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	583	586	first strand
Strand 2	E	593	600	anti-parallel
Strand 3	E	679	682	anti-parallel
Strand 4	E	629	631	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	583	586	first strand
Strand 2	E	593	600	anti-parallel
Strand 3	E	603	607	anti-parallel
Strand 4	E	645	646	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	649	650	first strand
Strand 2	E	664	665	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	719	726	first strand
Strand 2	E	729	736	anti-parallel
Strand 3	E	815	818	anti-parallel
Strand 4	E	765	769	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	719	726	first strand
Strand 2	E	729	736	anti-parallel
Strand 3	E	739	743	anti-parallel
Strand 4	E	781	783	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	827	first strand
Strand 2	E	836	843	anti-parallel
Strand 3	E	922	925	anti-parallel
Strand 4	E	873	876	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	827	first strand
Strand 2	E	836	843	anti-parallel
Strand 3	E	846	850	anti-parallel
Strand 4	E	887	890	parallel
Strand 5	E	913	914	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMU