Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FMV entry

There are 5 chains in PDB entry 9FMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 855
B
 SER 12ALA 155
C
 SER 12ALA 155
D
 SER 12ALA 155
E
 PRO 26ASN 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 9FMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
10 27Right-handed alpha
Helix 3
AA3
A
30 48Right-handed alpha
Helix 4
AA4
A
52 61Right-handed alpha
Helix 5
AA5
A
61 66Right-handed alpha
Helix 6
AA6
A
77 92Right-handed alpha
Helix 7
AA7
A
106 134Right-handed alpha
Helix 8
AA8
A
144 168Right-handed alpha
Helix 9
AA9
A
172 193Right-handed alpha
Helix 10
AB1
A
195 221Right-handed alpha
Helix 11
AB2
A
226 254Right-handed alpha
Helix 12
AB3
A
268 272Right-handed 310
Helix 13
AB4
A
285 298Right-handed alpha
Helix 14
AB5
A
302 304Right-handed 310
Helix 15
AB6
A
316 327Right-handed alpha
Helix 16
AB7
A
338 349Right-handed alpha
Helix 17
AB8
A
368 374Right-handed alpha
Helix 18
AB9
A
374 380Right-handed alpha
Helix 19
AC1
A
418 426Right-handed alpha
Helix 20
AC2
A
440 446Right-handed alpha
Helix 21
AC3
A
455 467Right-handed alpha
Helix 22
AC4
A
486 508Right-handed alpha
Helix 23
AC5
A
517 531Right-handed alpha
Helix 24
AC6
A
534 549Right-handed alpha
Helix 25
AC7
A
558 582Right-handed alpha
Helix 26
AC8
A
587 600Right-handed alpha
Helix 27
AC9
A
601 609Right-handed alpha
Helix 28
AD1
A
636 660Right-handed alpha
Helix 29
AD2
A
661 663Right-handed 310
Helix 30
AD3
A
664 692Right-handed alpha
Helix 31
AD4
A
778 790Right-handed alpha
Helix 32
AD5
A
810 830Right-handed alpha
Helix 33
AD6
A
831 850Right-handed alpha
Helix 34
AD7
B
14 18Right-handed 310
Helix 35
AD8
B
22 37Right-handed alpha
Helix 36
AD9
B
43 56Right-handed alpha
Helix 37
AE1
B
60 83Right-handed alpha
Helix 38
AE2
B
87 101Right-handed alpha
Helix 39
AE3
B
102 114Right-handed alpha
Helix 40
AE4
B
115 133Right-handed alpha
Helix 41
AE5
B
137 155Right-handed alpha
Helix 42
AE6
C
13 18Right-handed 310
Helix 43
AE7
C
23 37Right-handed alpha
Helix 44
AE8
C
43 56Right-handed alpha
Helix 45
AE9
C
60 83Right-handed alpha
Helix 46
AF1
C
87 101Right-handed alpha
Helix 47
AF2
C
102 114Right-handed alpha
Helix 48
AF3
C
115 133Right-handed alpha
Helix 49
AF4
C
137 155Right-handed alpha
Helix 50
AF5
D
22 38Right-handed alpha
Helix 51
AF6
D
43 55Right-handed alpha
Helix 52
AF7
D
60 83Right-handed alpha
Helix 53
AF8
D
87 101Right-handed alpha
Helix 54
AF9
D
102 114Right-handed alpha
Helix 55
AG1
D
115 136Right-handed alpha
Helix 56
AG2
D
138 155Right-handed alpha
Helix 57
AG3
E
27 36Right-handed alpha
Helix 58
AG4
E
38 70Right-handed alpha
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There are 2 sheets in PDB entry 9FMV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
306 312parallel
Strand 3
A
275 281parallel
Strand 4
A
355 358parallel
Strand 5
A
436 439anti-parallel
Strand 6
A
383 387anti-parallel
Strand 7
A
470 473parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
706 710first strand
Strand 2
A
716 725anti-parallel
Strand 3
A
728 733anti-parallel
Strand 4
A
769 774anti-parallel
Strand 5
A
754 766anti-parallel
Strand 6
A
744 751anti-parallel
Strand 7
A
706 710anti-parallel
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