Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FMW entry

There are 5 chains in PDB entry 9FMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 17	SER 1144
B	ASN 17	SER 1144
C	ASN 17	SER 1144
H	GLN 1	SER 113
L	GLN 1	LEU 106

There are 59 helices in PDB entry 9FMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	291	301	Right-handed alpha
Helix 2	AA2	A	361	366	Right-handed alpha
Helix 3	AA3	A	383	387	Right-handed 310
Helix 4	AA4	A	623	627	Right-handed 310
Helix 5	AA5	A	734	740	Right-handed alpha
Helix 6	AA6	A	745	753	Right-handed 310
Helix 7	AA7	A	756	780	Right-handed alpha
Helix 8	AA8	A	813	822	Right-handed alpha
Helix 9	AA9	A	846	853	Right-handed 310
Helix 10	AB1	A	863	881	Right-handed alpha
Helix 11	AB2	A	883	888	Right-handed 310
Helix 12	AB3	A	894	905	Right-handed alpha
Helix 13	AB4	A	909	915	Right-handed alpha
Helix 14	AB5	A	916	938	Right-handed alpha
Helix 15	AB6	A	942	964	Right-handed alpha
Helix 16	AB7	A	973	981	Right-handed alpha
Helix 17	AB8	A	982	1030	Right-handed alpha
Helix 18	AB9	A	1138	1143	Right-handed alpha
Helix 19	AC1	B	291	301	Right-handed alpha
Helix 20	AC2	B	334	340	Right-handed alpha
Helix 21	AC3	B	383	387	Right-handed 310
Helix 22	AC4	B	400	404	Right-handed 310
Helix 23	AC5	B	415	420	Right-handed alpha
Helix 24	AC6	B	620	627	Right-handed 310
Helix 25	AC7	B	734	740	Right-handed alpha
Helix 26	AC8	B	743	751	Right-handed alpha
Helix 27	AC9	B	752	754	Right-handed 310
Helix 28	AD1	B	755	780	Right-handed alpha
Helix 29	AD2	B	813	820	Right-handed alpha
Helix 30	AD3	B	846	853	Right-handed 310
Helix 31	AD4	B	863	881	Right-handed alpha
Helix 32	AD5	B	883	887	Right-handed 310
Helix 33	AD6	B	894	905	Right-handed alpha
Helix 34	AD7	B	909	915	Right-handed alpha
Helix 35	AD8	B	916	937	Right-handed alpha
Helix 36	AD9	B	942	962	Right-handed alpha
Helix 37	AE1	B	973	979	Right-handed alpha
Helix 38	AE2	B	982	1030	Right-handed alpha
Helix 39	AE3	B	1138	1142	Right-handed 310
Helix 40	AE4	C	291	300	Right-handed alpha
Helix 41	AE5	C	335	340	Right-handed alpha
Helix 42	AE6	C	383	386	Right-handed 310
Helix 43	AE7	C	402	407	Right-handed 310
Helix 44	AE8	C	621	627	Right-handed 310
Helix 45	AE9	C	734	740	Right-handed alpha
Helix 46	AF1	C	749	753	Right-handed 310
Helix 47	AF2	C	756	780	Right-handed alpha
Helix 48	AF3	C	813	823	Right-handed alpha
Helix 49	AF4	C	850	853	Right-handed 310
Helix 50	AF5	C	863	882	Right-handed alpha
Helix 51	AF6	C	883	888	Right-handed 310
Helix 52	AF7	C	894	906	Right-handed alpha
Helix 53	AF8	C	909	915	Right-handed alpha
Helix 54	AF9	C	916	937	Right-handed alpha
Helix 55	AG1	C	942	962	Right-handed alpha
Helix 56	AG2	C	973	981	Right-handed alpha
Helix 57	AG3	C	982	1030	Right-handed alpha
Helix 58	AG4	C	1137	1143	Right-handed alpha
Helix 59	AG5	L	79	83	Right-handed 310

There are 52 sheets in PDB entry 9FMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	30	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	262	266	anti-parallel
Strand 4	A	88	94	anti-parallel
Strand 5	A	183	192	anti-parallel
Strand 6	A	195	204	anti-parallel
Strand 7	A	221	226	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	55	first strand
Strand 2	A	268	276	anti-parallel
Strand 3	A	282	287	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	234	238	anti-parallel
Strand 3	A	101	105	anti-parallel
Strand 4	A	114	120	anti-parallel
Strand 5	A	123	129	anti-parallel
Strand 6	A	163	167	anti-parallel
Strand 7	H	98	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	155	157	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	316	first strand
Strand 2	A	589	596	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	639	642	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	392	394	anti-parallel
Strand 3	A	504	511	anti-parallel
Strand 4	A	428	434	anti-parallel
Strand 5	A	373	377	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	392	394	anti-parallel
Strand 3	A	504	511	anti-parallel
Strand 4	A	397	400	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	489	491	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	540	first strand
Strand 2	A	543	551	anti-parallel
Strand 3	A	581	585	anti-parallel
Strand 4	A	570	574	anti-parallel
Strand 5	A	562	564	anti-parallel
Strand 6	C	42	43	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	652	first strand
Strand 2	A	687	693	parallel
Strand 3	A	667	673	anti-parallel
Strand 4	A	661	664	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	701	first strand
Strand 2	C	784	787	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	725	first strand
Strand 2	A	1056	1075	anti-parallel
Strand 3	A	1044	1053	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	725	first strand
Strand 2	A	1056	1075	anti-parallel
Strand 3	A	1091	1094	anti-parallel
Strand 4	A	1099	1102	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	730	733	first strand
Strand 2	A	855	858	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	787	first strand
Strand 2	B	698	701	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1122	first strand
Strand 2	A	1083	1087	anti-parallel
Strand 3	A	1078	1079	anti-parallel
Strand 4	A	1130	1131	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	B	262	266	anti-parallel
Strand 4	B	88	93	anti-parallel
Strand 5	B	182	192	anti-parallel
Strand 6	B	195	206	anti-parallel
Strand 7	B	221	226	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	C	562	564	parallel
Strand 3	C	572	574	anti-parallel
Strand 4	C	581	583	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	101	105	anti-parallel
Strand 4	B	115	119	anti-parallel
Strand 5	B	124	133	anti-parallel
Strand 6	B	155	167	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	315	first strand
Strand 2	B	590	596	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	645	648	anti-parallel
Strand 5	B	639	642	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	394	first strand
Strand 2	B	505	512	anti-parallel
Strand 3	B	397	399	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	394	first strand
Strand 2	B	505	512	anti-parallel
Strand 3	B	429	433	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	450	first strand
Strand 2	B	490	491	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	471	first strand
Strand 2	B	485	486	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	540	first strand
Strand 2	B	543	551	anti-parallel
Strand 3	B	581	585	anti-parallel
Strand 4	B	570	574	anti-parallel
Strand 5	B	562	564	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	687	693	parallel
Strand 3	B	667	673	anti-parallel
Strand 4	B	661	664	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	725	first strand
Strand 2	B	1056	1075	anti-parallel
Strand 3	B	1044	1053	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	725	first strand
Strand 2	B	1056	1075	anti-parallel
Strand 3	B	1091	1094	anti-parallel
Strand 4	B	1099	1102	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	730	733	first strand
Strand 2	B	855	858	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	787	first strand
Strand 2	C	698	701	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1117	1122	first strand
Strand 2	B	1083	1087	anti-parallel
Strand 3	B	1078	1079	anti-parallel
Strand 4	B	1130	1131	parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	60	65	anti-parallel
Strand 3	C	262	266	anti-parallel
Strand 4	C	88	93	anti-parallel
Strand 5	C	184	192	anti-parallel
Strand 6	C	195	203	anti-parallel
Strand 7	C	221	226	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	268	276	anti-parallel
Strand 3	C	282	287	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	234	237	anti-parallel
Strand 3	C	101	105	anti-parallel
Strand 4	C	114	118	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	155	157	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	316	first strand
Strand 2	C	589	596	anti-parallel
Strand 3	C	606	610	anti-parallel
Strand 4	C	645	648	anti-parallel
Strand 5	C	639	642	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	325	first strand
Strand 2	C	535	540	parallel
Strand 3	C	543	548	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	391	400	anti-parallel
Strand 3	C	504	513	anti-parallel
Strand 4	C	428	434	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	359	first strand
Strand 2	C	521	522	parallel
Strand 3	C	388	389	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	451	first strand
Strand 2	C	489	490	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	471	first strand
Strand 2	C	485	486	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	C	687	693	parallel
Strand 3	C	667	673	anti-parallel
Strand 4	C	661	664	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1075	anti-parallel
Strand 3	C	1044	1053	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1075	anti-parallel
Strand 3	C	1091	1094	anti-parallel
Strand 4	C	1099	1102	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	733	first strand
Strand 2	C	855	858	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1117	1122	first strand
Strand 2	C	1083	1087	anti-parallel
Strand 3	C	1078	1079	anti-parallel
Strand 4	C	1130	1131	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	69	72	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	88	94	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FMW