Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FNC entry

There are 4 chains in PDB entry 9FNC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	TYR 670
B	PRO 2	TYR 670
C	ILE 5	SER 734
D	ILE 5	LYS 315

There are108 helices in PDB entry 9FNC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	44	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	59	64	Right-handed alpha
Helix 4	AA4	A	92	128	Right-handed alpha
Helix 5	AA5	A	138	150	Right-handed alpha
Helix 6	AA6	A	157	175	Right-handed alpha
Helix 7	AA7	A	182	187	Right-handed alpha
Helix 8	AA8	A	190	200	Right-handed alpha
Helix 9	AA9	A	207	218	Right-handed alpha
Helix 10	AB1	A	225	256	Right-handed alpha
Helix 11	AB2	A	266	270	Right-handed 310
Helix 12	AB3	A	283	296	Right-handed alpha
Helix 13	AB4	A	297	304	Right-handed alpha
Helix 14	AB5	A	315	326	Right-handed alpha
Helix 15	AB6	A	336	342	Right-handed alpha
Helix 16	AB7	A	357	364	Right-handed alpha
Helix 17	AB8	A	391	410	Right-handed alpha
Helix 18	AB9	A	429	439	Right-handed alpha
Helix 19	AC1	A	444	455	Right-handed alpha
Helix 20	AC2	A	475	488	Right-handed alpha
Helix 21	AC3	A	496	505	Right-handed alpha
Helix 22	AC4	A	509	516	Right-handed 310
Helix 23	AC5	A	517	532	Right-handed alpha
Helix 24	AC6	A	545	547	Right-handed 310
Helix 25	AC7	A	548	564	Right-handed alpha
Helix 26	AC8	A	566	570	Right-handed 310
Helix 27	AC9	A	581	595	Right-handed alpha
Helix 28	AD1	A	609	618	Right-handed alpha
Helix 29	AD2	A	618	624	Right-handed alpha
Helix 30	AD3	A	633	663	Right-handed alpha
Helix 31	AD4	B	30	44	Right-handed alpha
Helix 32	AD5	B	47	56	Right-handed alpha
Helix 33	AD6	B	59	64	Right-handed alpha
Helix 34	AD7	B	92	128	Right-handed alpha
Helix 35	AD8	B	138	149	Right-handed alpha
Helix 36	AD9	B	157	175	Right-handed alpha
Helix 37	AE1	B	182	189	Right-handed alpha
Helix 38	AE2	B	190	201	Right-handed alpha
Helix 39	AE3	B	207	218	Right-handed alpha
Helix 40	AE4	B	225	256	Right-handed alpha
Helix 41	AE5	B	266	270	Right-handed 310
Helix 42	AE6	B	283	304	Right-handed alpha
Helix 43	AE7	B	315	326	Right-handed alpha
Helix 44	AE8	B	336	342	Right-handed alpha
Helix 45	AE9	B	357	365	Right-handed alpha
Helix 46	AF1	B	391	410	Right-handed alpha
Helix 47	AF2	B	429	438	Right-handed alpha
Helix 48	AF3	B	444	455	Right-handed alpha
Helix 49	AF4	B	475	488	Right-handed alpha
Helix 50	AF5	B	496	505	Right-handed alpha
Helix 51	AF6	B	509	516	Right-handed 310
Helix 52	AF7	B	517	532	Right-handed alpha
Helix 53	AF8	B	545	547	Right-handed 310
Helix 54	AF9	B	548	564	Right-handed alpha
Helix 55	AG1	B	566	570	Right-handed 310
Helix 56	AG2	B	581	594	Right-handed alpha
Helix 57	AG3	B	609	618	Right-handed alpha
Helix 58	AG4	B	618	624	Right-handed alpha
Helix 59	AG5	B	633	663	Right-handed alpha
Helix 60	AG6	C	6	12	Right-handed 310
Helix 61	AG7	C	21	51	Right-handed alpha
Helix 62	AG8	C	65	72	Right-handed alpha
Helix 63	AG9	C	81	92	Right-handed alpha
Helix 64	AH1	C	98	122	Right-handed alpha
Helix 65	AH2	C	140	147	Right-handed alpha
Helix 66	AH3	C	147	153	Right-handed alpha
Helix 67	AH4	C	168	183	Right-handed alpha
Helix 68	AH5	C	191	199	Right-handed alpha
Helix 69	AH6	C	204	207	Right-handed 310
Helix 70	AH7	C	214	217	Right-handed 310
Helix 71	AH8	C	218	232	Right-handed alpha
Helix 72	AH9	C	239	251	Right-handed alpha
Helix 73	AI1	C	262	275	Right-handed alpha
Helix 74	AI2	C	286	290	Right-handed 310
Helix 75	AI3	C	303	313	Right-handed alpha
Helix 76	AI4	C	328	332	Right-handed 310
Helix 77	AI5	C	375	379	Right-handed 310
Helix 78	AI6	C	401	416	Right-handed alpha
Helix 79	AI7	C	435	441	Right-handed alpha
Helix 80	AI8	C	443	459	Right-handed alpha
Helix 81	AI9	C	473	497	Right-handed alpha
Helix 82	AJ1	C	510	515	Right-handed 310
Helix 83	AJ2	C	535	546	Right-handed alpha
Helix 84	AJ3	C	568	578	Right-handed alpha
Helix 85	AJ4	C	630	639	Right-handed alpha
Helix 86	AJ5	C	651	657	Right-handed 310
Helix 87	AJ6	C	665	668	Right-handed 310
Helix 88	AJ7	C	674	681	Right-handed alpha
Helix 89	AJ8	C	681	692	Right-handed alpha
Helix 90	AJ9	C	698	702	Right-handed 310
Helix 91	AK1	C	710	722	Right-handed alpha
Helix 92	AK2	C	723	728	Right-handed 310
Helix 93	AK3	D	6	12	Right-handed 310
Helix 94	AK4	D	21	50	Right-handed alpha
Helix 95	AK5	D	65	72	Right-handed alpha
Helix 96	AK6	D	81	92	Right-handed alpha
Helix 97	AK7	D	98	121	Right-handed alpha
Helix 98	AK8	D	122	124	Right-handed 310
Helix 99	AK9	D	140	153	Right-handed alpha
Helix 100	AL1	D	168	182	Right-handed alpha
Helix 101	AL2	D	191	199	Right-handed alpha
Helix 102	AL3	D	204	207	Right-handed 310
Helix 103	AL4	D	214	217	Right-handed 310
Helix 104	AL5	D	218	232	Right-handed alpha
Helix 105	AL6	D	239	250	Right-handed alpha
Helix 106	AL7	D	262	276	Right-handed alpha
Helix 107	AL8	D	286	290	Right-handed 310
Helix 108	AL9	D	303	313	Right-handed alpha

There are 15 sheets in PDB entry 9FNC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	265	first strand
Strand 2	A	422	426	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	309	314	parallel
Strand 3	A	275	280	parallel
Strand 4	A	347	350	parallel
Strand 5	A	369	372	parallel
Strand 6	A	383	384	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	544	first strand
Strand 2	A	490	495	parallel
Strand 3	A	460	464	parallel
Strand 4	A	572	576	parallel
Strand 5	A	597	600	parallel
Strand 6	A	627	630	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	76	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	265	first strand
Strand 2	B	422	426	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	309	314	parallel
Strand 3	B	275	280	parallel
Strand 4	B	345	350	parallel
Strand 5	B	370	372	parallel
Strand 6	B	383	384	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	544	first strand
Strand 2	B	491	495	parallel
Strand 3	B	461	464	parallel
Strand 4	B	573	576	parallel
Strand 5	B	597	600	parallel
Strand 6	B	627	630	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	213	first strand
Strand 2	C	185	189	parallel
Strand 3	C	159	164	parallel
Strand 4	C	253	258	parallel
Strand 5	C	279	281	parallel
Strand 6	C	295	297	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	341	346	parallel
Strand 3	C	430	434	anti-parallel
Strand 4	C	420	423	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	358	first strand
Strand 2	C	387	394	parallel
Strand 3	C	465	471	anti-parallel
Strand 4	C	368	372	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	523	first strand
Strand 2	C	505	509	anti-parallel
Strand 3	C	553	555	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	561	first strand
Strand 2	C	566	567	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	647	650	first strand
Strand 2	C	603	608	anti-parallel
Strand 3	C	613	618	anti-parallel
Strand 4	C	670	672	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	213	first strand
Strand 2	D	185	189	parallel
Strand 3	D	159	164	parallel
Strand 4	D	253	258	parallel
Strand 5	D	279	281	parallel
Strand 6	D	295	297	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FNC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNC