Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FNE entry

There are 11 chains in PDB entry 9FNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASN 226
B	MET 1	PRO 236
C	ASN 21	GLY 1141
D	MET 1	ALA 1283
E	ILE 18	GLY 106
F	GLU 148	LEU 465
J	ASP 23	GLY 111
O	A 30	A 72
P	T 83	T 125
Y	SER 2	VAL 318
X	ALA 2	ARG 331

There are139 helices in PDB entry 9FNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed alpha
Helix 5	AA5	A	203	225	Right-handed alpha
Helix 6	AA6	B	29	45	Right-handed alpha
Helix 7	AA7	B	72	82	Right-handed alpha
Helix 8	AA8	B	203	224	Right-handed alpha
Helix 9	AA9	C	45	57	Right-handed alpha
Helix 10	AB1	C	58	69	Right-handed alpha
Helix 11	AB2	C	75	85	Right-handed alpha
Helix 12	AB3	C	109	117	Right-handed alpha
Helix 13	AB4	C	225	232	Right-handed alpha
Helix 14	AB5	C	235	243	Right-handed alpha
Helix 15	AB6	C	246	256	Right-handed alpha
Helix 16	AB7	C	261	273	Right-handed alpha
Helix 17	AB8	C	281	291	Right-handed alpha
Helix 18	AB9	C	300	312	Right-handed alpha
Helix 19	AC1	C	325	342	Right-handed alpha
Helix 20	AC2	C	371	396	Right-handed alpha
Helix 21	AC3	C	404	409	Right-handed alpha
Helix 22	AC4	C	411	425	Right-handed alpha
Helix 23	AC5	C	435	444	Right-handed alpha
Helix 24	AC6	C	523	530	Right-handed alpha
Helix 25	AC7	C	563	567	Right-handed 310
Helix 26	AC8	C	581	585	Right-handed 310
Helix 27	AC9	C	592	603	Right-handed alpha
Helix 28	AD1	C	622	630	Right-handed alpha
Helix 29	AD2	C	730	735	Right-handed alpha
Helix 30	AD3	C	770	774	Right-handed 310
Helix 31	AD4	C	806	817	Right-handed alpha
Helix 32	AD5	C	847	849	Right-handed 310
Helix 33	AD6	C	918	932	Right-handed alpha
Helix 34	AD7	C	944	948	Right-handed 310
Helix 35	AD8	C	951	954	Right-handed 310
Helix 36	AD9	C	972	982	Right-handed alpha
Helix 37	AE1	C	1027	1032	Right-handed alpha
Helix 38	AE2	C	1060	1071	Right-handed alpha
Helix 39	AE3	C	1072	1082	Right-handed alpha
Helix 40	AE4	C	1086	1100	Right-handed alpha
Helix 41	AE5	C	1109	1121	Right-handed alpha
Helix 42	AE6	D	3	7	Right-handed 310
Helix 43	AE7	D	16	23	Right-handed alpha
Helix 44	AE8	D	48	53	Right-handed alpha
Helix 45	AE9	D	84	90	Right-handed 310
Helix 46	AF1	D	112	119	Right-handed alpha
Helix 47	AF2	D	121	130	Right-handed alpha
Helix 48	AF3	D	140	147	Right-handed alpha
Helix 49	AF4	D	147	187	Right-handed alpha
Helix 50	AF5	D	190	228	Right-handed alpha
Helix 51	AF6	D	237	248	Right-handed alpha
Helix 52	AF7	D	257	268	Right-handed alpha
Helix 53	AF8	D	269	284	Right-handed alpha
Helix 54	AF9	D	286	305	Right-handed alpha
Helix 55	AG1	D	308	311	Right-handed 310
Helix 56	AG2	D	321	325	Right-handed 310
Helix 57	AG3	D	340	361	Right-handed alpha
Helix 58	AG4	D	363	383	Right-handed alpha
Helix 59	AG5	D	393	397	Right-handed 310
Helix 60	AG6	D	401	407	Right-handed alpha
Helix 61	AG7	D	411	417	Right-handed alpha
Helix 62	AG8	D	445	452	Right-handed alpha
Helix 63	AG9	D	452	463	Right-handed alpha
Helix 64	AH1	D	468	479	Right-handed alpha
Helix 65	AH2	D	482	491	Right-handed alpha
Helix 66	AH3	D	505	507	Right-handed 310
Helix 67	AH4	D	525	527	Right-handed 310
Helix 68	AH5	D	528	533	Right-handed alpha
Helix 69	AH6	D	548	558	Right-handed alpha
Helix 70	AH7	D	579	590	Right-handed alpha
Helix 71	AH8	D	614	623	Right-handed alpha
Helix 72	AH9	D	645	651	Right-handed alpha
Helix 73	AI1	D	666	676	Right-handed alpha
Helix 74	AI2	D	688	703	Right-handed alpha
Helix 75	AI3	D	704	724	Right-handed alpha
Helix 76	AI4	D	740	761	Right-handed alpha
Helix 77	AI5	D	765	792	Right-handed alpha
Helix 78	AI6	D	796	804	Right-handed alpha
Helix 79	AI7	D	809	817	Right-handed alpha
Helix 80	AI8	D	844	880	Right-handed alpha
Helix 81	AI9	D	944	954	Right-handed alpha
Helix 82	AJ1	D	975	979	Right-handed alpha
Helix 83	AJ2	D	993	1004	Right-handed alpha
Helix 84	AJ3	D	1005	1007	Right-handed 310
Helix 85	AJ4	D	1028	1037	Right-handed alpha
Helix 86	AJ5	D	1118	1126	Right-handed alpha
Helix 87	AJ6	D	1127	1145	Right-handed alpha
Helix 88	AJ7	D	1151	1162	Right-handed alpha
Helix 89	AJ8	D	1184	1196	Right-handed alpha
Helix 90	AJ9	D	1210	1216	Right-handed alpha
Helix 91	AK1	D	1220	1228	Right-handed alpha
Helix 92	AK2	D	1229	1241	Right-handed alpha
Helix 93	AK3	D	1248	1255	Right-handed alpha
Helix 94	AK4	D	1261	1264	Right-handed 310
Helix 95	AK5	D	1265	1270	Right-handed alpha
Helix 96	AK6	D	1276	1283	Right-handed alpha
Helix 97	AK7	E	30	34	Right-handed 310
Helix 98	AK8	E	36	44	Right-handed alpha
Helix 99	AK9	E	47	66	Right-handed alpha
Helix 100	AL1	E	87	98	Right-handed alpha
Helix 101	AL2	F	149	159	Right-handed alpha
Helix 102	AL3	F	164	174	Right-handed alpha
Helix 103	AL4	F	182	206	Right-handed alpha
Helix 104	AL5	F	212	237	Right-handed alpha
Helix 105	AL6	F	237	246	Right-handed alpha
Helix 106	AL7	F	254	272	Right-handed alpha
Helix 107	AL8	F	280	300	Right-handed alpha
Helix 108	AL9	F	307	329	Right-handed alpha
Helix 109	AM1	F	333	341	Right-handed alpha
Helix 110	AM2	F	346	355	Right-handed alpha
Helix 111	AM3	F	372	376	Right-handed 310
Helix 112	AM4	F	386	403	Right-handed alpha
Helix 113	AM5	F	406	417	Right-handed alpha
Helix 114	AM6	F	426	435	Right-handed alpha
Helix 115	AM7	F	437	453	Right-handed alpha
Helix 116	AM8	F	454	463	Right-handed alpha
Helix 117	AM9	J	80	89	Right-handed alpha
Helix 118	AN1	J	90	111	Right-handed alpha
Helix 119	AN2	Y	3	21	Right-handed alpha
Helix 120	AN3	Y	26	34	Right-handed alpha
Helix 121	AN4	Y	36	49	Right-handed alpha
Helix 122	AN5	Y	85	101	Right-handed alpha
Helix 123	AN6	Y	107	123	Right-handed alpha
Helix 124	AN7	Y	141	153	Right-handed alpha
Helix 125	AN8	Y	217	223	Right-handed alpha
Helix 126	AN9	Y	250	255	Right-handed alpha
Helix 127	AO1	Y	276	288	Right-handed alpha
Helix 128	AO2	Y	296	317	Right-handed alpha
Helix 129	AO3	X	4	19	Right-handed alpha
Helix 130	AO4	X	24	32	Right-handed alpha
Helix 131	AO5	X	40	58	Right-handed alpha
Helix 132	AO6	X	79	84	Right-handed alpha
Helix 133	AO7	X	91	102	Right-handed alpha
Helix 134	AO8	X	107	124	Right-handed alpha
Helix 135	AO9	X	150	163	Right-handed alpha
Helix 136	AP1	X	235	245	Right-handed alpha
Helix 137	AP2	X	262	269	Right-handed alpha
Helix 138	AP3	X	291	303	Right-handed alpha
Helix 139	AP4	X	311	327	Right-handed alpha

There are 49 sheets in PDB entry 9FNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	13	15	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	181	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	93	100	anti-parallel
Strand 3	B	133	144	anti-parallel
Strand 4	B	47	56	anti-parallel
Strand 5	B	162	163	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	103	first strand
Strand 2	C	121	132	anti-parallel
Strand 3	C	138	149	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	182	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	213	217	anti-parallel
Strand 5	C	223	224	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	354	355	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	514	522	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	569	570	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	532	533	first strand
Strand 2	C	550	554	anti-parallel
Strand 3	C	557	562	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	659	662	first strand
Strand 2	C	648	651	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	668	first strand
Strand 2	C	674	675	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	700	first strand
Strand 2	C	703	704	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	877	anti-parallel
Strand 4	C	883	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	908	anti-parallel
Strand 7	C	707	714	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	739	751	first strand
Strand 2	C	856	869	anti-parallel
Strand 3	C	836	845	anti-parallel
Strand 4	C	786	787	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	799	anti-parallel
Strand 3	C	823	825	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	956	957	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1057	1059	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1127	1129	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1243	1244	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	319	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	359	360	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	633	637	parallel
Strand 3	D	661	665	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	899	first strand
Strand 2	D	958	961	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1052	1058	first strand
Strand 2	D	1063	1069	anti-parallel
Strand 3	D	1076	1077	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1168	anti-parallel
Strand 3	D	1204	1207	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	24	25	first strand
Strand 2	Y	69	70	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	62	63	first strand
Strand 2	Y	72	74	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	196	201	first strand
Strand 2	Y	184	191	anti-parallel
Strand 3	Y	167	181	anti-parallel
Strand 4	Y	156	162	anti-parallel
Strand 5	Y	205	210	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	270	273	first strand
Strand 2	Y	239	244	anti-parallel
Strand 3	Y	291	295	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	62	66	first strand
Strand 2	X	74	78	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	207	211	first strand
Strand 2	X	194	201	anti-parallel
Strand 3	X	179	191	anti-parallel
Strand 4	X	165	170	anti-parallel
Strand 5	X	220	222	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	271	274	first strand
Strand 2	X	282	287	anti-parallel
Strand 3	X	253	258	anti-parallel
Strand 4	X	306	308	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 9FNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNE