Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FNH entry

There are 5 chains in PDB entry 9FNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 35	ALA 431
B	SER 35	ALA 431
C	SER 35	ALA 431
D	LYS 33	ALA 431
X	LEU 6	ASN 17

There are 51 helices in PDB entry 9FNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	48	Right-handed 310
Helix 2	AA2	A	52	66	Right-handed alpha
Helix 3	AA3	A	81	96	Right-handed alpha
Helix 4	AA4	A	110	112	Right-handed 310
Helix 5	AA5	A	113	125	Right-handed alpha
Helix 6	AA6	A	149	156	Right-handed alpha
Helix 7	AA7	A	168	175	Right-handed alpha
Helix 8	AA8	A	203	213	Right-handed alpha
Helix 9	AA9	A	241	254	Right-handed alpha
Helix 10	AB1	A	265	269	Right-handed 310
Helix 11	AB2	A	284	289	Right-handed alpha
Helix 12	AB3	A	295	309	Right-handed alpha
Helix 13	AB4	A	344	348	Right-handed 310
Helix 14	AB5	B	46	48	Right-handed 310
Helix 15	AB6	B	52	67	Right-handed alpha
Helix 16	AB7	B	81	96	Right-handed alpha
Helix 17	AB8	B	110	112	Right-handed 310
Helix 18	AB9	B	113	125	Right-handed alpha
Helix 19	AC1	B	149	156	Right-handed alpha
Helix 20	AC2	B	203	214	Right-handed alpha
Helix 21	AC3	B	241	254	Right-handed alpha
Helix 22	AC4	B	265	269	Right-handed 310
Helix 23	AC5	B	284	289	Right-handed alpha
Helix 24	AC6	B	295	310	Right-handed alpha
Helix 25	AC7	B	344	348	Right-handed 310
Helix 26	AC8	C	46	48	Right-handed 310
Helix 27	AC9	C	52	65	Right-handed alpha
Helix 28	AD1	C	81	97	Right-handed alpha
Helix 29	AD2	C	110	112	Right-handed 310
Helix 30	AD3	C	113	125	Right-handed alpha
Helix 31	AD4	C	149	156	Right-handed alpha
Helix 32	AD5	C	168	175	Right-handed alpha
Helix 33	AD6	C	203	213	Right-handed alpha
Helix 34	AD7	C	241	254	Right-handed alpha
Helix 35	AD8	C	265	269	Right-handed 310
Helix 36	AD9	C	284	289	Right-handed alpha
Helix 37	AE1	C	295	310	Right-handed alpha
Helix 38	AE2	C	344	348	Right-handed 310
Helix 39	AE3	D	46	48	Right-handed 310
Helix 40	AE4	D	52	67	Right-handed alpha
Helix 41	AE5	D	81	97	Right-handed alpha
Helix 42	AE6	D	110	112	Right-handed 310
Helix 43	AE7	D	113	125	Right-handed alpha
Helix 44	AE8	D	149	156	Right-handed alpha
Helix 45	AE9	D	168	173	Right-handed alpha
Helix 46	AF1	D	203	213	Right-handed alpha
Helix 47	AF2	D	241	254	Right-handed alpha
Helix 48	AF3	D	265	269	Right-handed 310
Helix 49	AF4	D	284	289	Right-handed alpha
Helix 50	AF5	D	295	309	Right-handed alpha
Helix 51	AF6	D	344	348	Right-handed 310

There are 20 sheets in PDB entry 9FNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	136	142	anti-parallel
Strand 3	A	160	163	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	136	142	anti-parallel
Strand 3	A	99	105	parallel
Strand 4	A	70	75	parallel
Strand 5	A	38	44	parallel
Strand 6	A	257	260	parallel
Strand 7	A	217	222	parallel
Strand 8	A	181	183	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	233	236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	387	first strand
Strand 2	A	351	358	anti-parallel
Strand 3	A	320	325	anti-parallel
Strand 4	A	425	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	377	first strand
Strand 2	A	362	368	anti-parallel
Strand 3	A	393	399	anti-parallel
Strand 4	A	402	408	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	136	142	anti-parallel
Strand 3	B	160	162	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	136	142	anti-parallel
Strand 3	B	99	105	parallel
Strand 4	B	70	75	parallel
Strand 5	B	38	44	parallel
Strand 6	B	257	260	parallel
Strand 7	B	217	222	parallel
Strand 8	B	181	183	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	234	236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	387	first strand
Strand 2	B	351	358	anti-parallel
Strand 3	B	320	325	anti-parallel
Strand 4	B	425	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	377	first strand
Strand 2	B	362	368	anti-parallel
Strand 3	B	393	399	anti-parallel
Strand 4	B	402	408	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	136	142	anti-parallel
Strand 3	C	160	162	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	136	142	anti-parallel
Strand 3	C	99	105	parallel
Strand 4	C	70	75	parallel
Strand 5	C	38	44	parallel
Strand 6	C	257	260	parallel
Strand 7	C	217	222	parallel
Strand 8	C	181	183	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	233	236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	387	first strand
Strand 2	C	351	358	anti-parallel
Strand 3	C	320	325	anti-parallel
Strand 4	C	425	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	377	first strand
Strand 2	C	362	368	anti-parallel
Strand 3	C	393	399	anti-parallel
Strand 4	C	402	408	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	136	142	anti-parallel
Strand 3	D	160	163	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	133	first strand
Strand 2	D	136	142	anti-parallel
Strand 3	D	99	105	parallel
Strand 4	D	70	75	parallel
Strand 5	D	38	44	parallel
Strand 6	D	257	260	parallel
Strand 7	D	217	222	parallel
Strand 8	D	181	183	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	D	234	236	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	387	first strand
Strand 2	D	351	358	anti-parallel
Strand 3	D	320	325	anti-parallel
Strand 4	D	425	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	377	first strand
Strand 2	D	362	368	anti-parallel
Strand 3	D	393	399	anti-parallel
Strand 4	D	402	408	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNH