Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FNM entry

There are 2 chains in PDB entry 9FNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 92VAL 159
B
 ILE 162GLU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9FNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
200 205Right-handed alpha
Helix 2
AA2
B
213 218Right-handed alpha
Helix 3
AA3
B
219 221Right-handed 310
Helix 4
AA4
B
305 314Right-handed alpha
Helix 5
AA5
B
318 322Right-handed 310
Helix 6
AA6
B
395 404Right-handed alpha
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There are 4 sheets in PDB entry 9FNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
133 134anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
144 147anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
297 302anti-parallel
Strand 3
B
278 283anti-parallel
Strand 4
B
358 363anti-parallel
Strand 5
B
368 377anti-parallel
Strand 6
B
387 391anti-parallel
Strand 7
B
338 341anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
222 225anti-parallel
Strand 3
B
176 180anti-parallel
Strand 4
B
186 191anti-parallel
Strand 5
B
196 199anti-parallel
Strand 6
B
248 252anti-parallel
Strand 7
B
233 238anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il