Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FNN entry

There are 15 chains in PDB entry 9FNN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 853
B	PRO 26	ASN 70
E	VAL 5	LEU 515
F	ILE 7	ARG 53
Q	ALA 2	GLY 241
R	PRO 32	GLN 60
S	ILE 4	ARG 53
U	VAL 5	LEU 515
V	ASN 20	GLN 60
W	ALA 2	GLY 241
X	PRO 731	ARG 772
Y	PRO 731	ARG 772
Z	PRO 731	ARG 772
G	SER 12	ALA 155
D	SER 12	ALA 155

There are127 helices in PDB entry 9FNN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	9	Right-handed alpha
Helix 2	AA2	A	10	27	Right-handed alpha
Helix 3	AA3	A	30	48	Right-handed alpha
Helix 4	AA4	A	52	61	Right-handed alpha
Helix 5	AA5	A	61	66	Right-handed alpha
Helix 6	AA6	A	77	92	Right-handed alpha
Helix 7	AA7	A	144	168	Right-handed alpha
Helix 8	AA8	A	172	192	Right-handed alpha
Helix 9	AA9	A	196	221	Right-handed alpha
Helix 10	AB1	A	227	254	Right-handed alpha
Helix 11	AB2	A	285	298	Right-handed alpha
Helix 12	AB3	A	302	304	Right-handed 310
Helix 13	AB4	A	316	327	Right-handed alpha
Helix 14	AB5	A	338	351	Right-handed alpha
Helix 15	AB6	A	368	374	Right-handed alpha
Helix 16	AB7	A	375	379	Right-handed 310
Helix 17	AB8	A	396	403	Right-handed alpha
Helix 18	AB9	A	410	414	Right-handed 310
Helix 19	AC1	A	418	426	Right-handed alpha
Helix 20	AC2	A	440	446	Right-handed alpha
Helix 21	AC3	A	455	467	Right-handed alpha
Helix 22	AC4	A	486	508	Right-handed alpha
Helix 23	AC5	A	517	530	Right-handed alpha
Helix 24	AC6	A	533	542	Right-handed alpha
Helix 25	AC7	A	543	550	Right-handed alpha
Helix 26	AC8	A	558	581	Right-handed alpha
Helix 27	AC9	A	589	611	Right-handed alpha
Helix 28	AD1	A	632	660	Right-handed alpha
Helix 29	AD2	A	665	689	Right-handed alpha
Helix 30	AD3	A	778	789	Right-handed alpha
Helix 31	AD4	A	794	802	Right-handed alpha
Helix 32	AD5	A	807	827	Right-handed alpha
Helix 33	AD6	A	832	852	Right-handed alpha
Helix 34	AD7	B	27	35	Right-handed alpha
Helix 35	AD8	B	38	69	Right-handed alpha
Helix 36	AD9	E	35	49	Right-handed alpha
Helix 37	AE1	E	64	69	Right-handed alpha
Helix 38	AE2	E	88	103	Right-handed alpha
Helix 39	AE3	E	117	121	Right-handed 310
Helix 40	AE4	E	123	142	Right-handed alpha
Helix 41	AE5	E	154	164	Right-handed alpha
Helix 42	AE6	E	233	235	Right-handed 310
Helix 43	AE7	E	252	261	Right-handed alpha
Helix 44	AE8	E	272	274	Right-handed 310
Helix 45	AE9	E	275	290	Right-handed alpha
Helix 46	AF1	E	306	317	Right-handed alpha
Helix 47	AF2	E	327	338	Right-handed alpha
Helix 48	AF3	E	351	356	Right-handed alpha
Helix 49	AF4	E	368	381	Right-handed alpha
Helix 50	AF5	E	403	410	Right-handed alpha
Helix 51	AF6	E	438	447	Right-handed alpha
Helix 52	AF7	E	463	475	Right-handed alpha
Helix 53	AF8	F	8	28	Right-handed alpha
Helix 54	AF9	F	28	41	Right-handed alpha
Helix 55	AG1	Q	14	29	Right-handed alpha
Helix 56	AG2	Q	44	49	Right-handed 310
Helix 57	AG3	Q	57	63	Right-handed alpha
Helix 58	AG4	Q	67	71	Right-handed 310
Helix 59	AG5	Q	88	94	Right-handed alpha
Helix 60	AG6	Q	95	98	Right-handed 310
Helix 61	AG7	Q	104	116	Right-handed alpha
Helix 62	AG8	Q	130	140	Right-handed alpha
Helix 63	AG9	Q	150	158	Right-handed alpha
Helix 64	AH1	Q	177	191	Right-handed alpha
Helix 65	AH2	Q	202	211	Right-handed alpha
Helix 66	AH3	Q	214	219	Right-handed alpha
Helix 67	AH4	Q	222	239	Right-handed alpha
Helix 68	AH5	R	42	52	Right-handed alpha
Helix 69	AH6	R	52	60	Right-handed alpha
Helix 70	AH7	S	5	28	Right-handed alpha
Helix 71	AH8	S	28	40	Right-handed alpha
Helix 72	AH9	U	17	21	Right-handed alpha
Helix 73	AI1	U	35	50	Right-handed alpha
Helix 74	AI2	U	64	69	Right-handed alpha
Helix 75	AI3	U	88	103	Right-handed alpha
Helix 76	AI4	U	123	142	Right-handed alpha
Helix 77	AI5	U	154	164	Right-handed alpha
Helix 78	AI6	U	252	259	Right-handed alpha
Helix 79	AI7	U	272	275	Right-handed 310
Helix 80	AI8	U	276	290	Right-handed alpha
Helix 81	AI9	U	306	317	Right-handed alpha
Helix 82	AJ1	U	327	338	Right-handed alpha
Helix 83	AJ2	U	350	358	Right-handed alpha
Helix 84	AJ3	U	368	381	Right-handed alpha
Helix 85	AJ4	U	403	410	Right-handed alpha
Helix 86	AJ5	U	438	446	Right-handed alpha
Helix 87	AJ6	U	463	476	Right-handed alpha
Helix 88	AJ7	U	477	482	Right-handed 310
Helix 89	AJ8	U	487	491	Right-handed 310
Helix 90	AJ9	V	21	29	Right-handed alpha
Helix 91	AK1	V	38	52	Right-handed alpha
Helix 92	AK2	V	52	60	Right-handed alpha
Helix 93	AK3	W	14	29	Right-handed alpha
Helix 94	AK4	W	44	49	Right-handed 310
Helix 95	AK5	W	57	65	Right-handed alpha
Helix 96	AK6	W	67	71	Right-handed 310
Helix 97	AK7	W	88	94	Right-handed alpha
Helix 98	AK8	W	95	98	Right-handed 310
Helix 99	AK9	W	103	116	Right-handed alpha
Helix 100	AL1	W	130	140	Right-handed alpha
Helix 101	AL2	W	150	157	Right-handed alpha
Helix 102	AL3	W	177	191	Right-handed alpha
Helix 103	AL4	W	202	209	Right-handed alpha
Helix 104	AL5	W	214	219	Right-handed alpha
Helix 105	AL6	W	222	239	Right-handed alpha
Helix 106	AL7	X	732	743	Right-handed alpha
Helix 107	AL8	X	745	770	Right-handed alpha
Helix 108	AL9	Y	732	743	Right-handed alpha
Helix 109	AM1	Y	745	772	Right-handed alpha
Helix 110	AM2	Z	732	743	Right-handed alpha
Helix 111	AM3	Z	745	772	Right-handed alpha
Helix 112	AM4	G	13	18	Right-handed 310
Helix 113	AM5	G	24	37	Right-handed alpha
Helix 114	AM6	G	43	56	Right-handed alpha
Helix 115	AM7	G	60	83	Right-handed alpha
Helix 116	AM8	G	87	94	Right-handed alpha
Helix 117	AM9	G	94	101	Right-handed alpha
Helix 118	AN1	G	102	114	Right-handed alpha
Helix 119	AN2	G	115	133	Right-handed alpha
Helix 120	AN3	G	137	155	Right-handed alpha
Helix 121	AN4	D	23	38	Right-handed alpha
Helix 122	AN5	D	43	55	Right-handed alpha
Helix 123	AN6	D	60	83	Right-handed alpha
Helix 124	AN7	D	87	101	Right-handed alpha
Helix 125	AN8	D	102	114	Right-handed alpha
Helix 126	AN9	D	115	136	Right-handed alpha
Helix 127	AO1	D	138	155	Right-handed alpha

There are 15 sheets in PDB entry 9FNN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	306	312	parallel
Strand 3	A	275	281	parallel
Strand 4	A	355	358	parallel
Strand 5	A	436	439	anti-parallel
Strand 6	A	383	387	anti-parallel
Strand 7	A	470	473	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	479	481	anti-parallel
Strand 3	A	391	392	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	631	first strand
Strand 2	A	690	691	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	710	first strand
Strand 2	A	716	725	anti-parallel
Strand 3	A	728	732	anti-parallel
Strand 4	A	769	774	anti-parallel
Strand 5	A	754	766	anti-parallel
Strand 6	A	744	751	anti-parallel
Strand 7	A	701	710	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	10	first strand
Strand 2	E	22	24	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	211	first strand
Strand 2	E	193	205	anti-parallel
Strand 3	E	181	190	anti-parallel
Strand 4	E	170	176	anti-parallel
Strand 5	E	28	33	parallel
Strand 6	E	144	150	parallel
Strand 7	E	109	113	parallel
Strand 8	E	56	61	parallel
Strand 9	E	80	85	parallel
Strand 10	F	47	52	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	248	first strand
Strand 2	E	228	231	parallel
Strand 3	E	265	270	parallel
Strand 4	E	295	300	parallel
Strand 5	E	320	322	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	365	366	first strand
Strand 2	E	419	422	parallel
Strand 3	E	427	432	anti-parallel
Strand 4	E	391	398	anti-parallel
Strand 5	E	455	461	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	510	512	first strand
Strand 2	Q	72	76	anti-parallel
Strand 3	Q	79	82	anti-parallel
Strand 4	Q	33	37	parallel
Strand 5	Q	120	124	parallel
Strand 6	Q	3	8	parallel
Strand 7	Q	142	147	parallel
Strand 8	Q	167	173	parallel
Strand 9	Q	194	200	parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	51	52	first strand
Strand 2	U	80	85	anti-parallel
Strand 3	U	55	61	parallel
Strand 4	U	108	113	parallel
Strand 5	U	143	150	parallel
Strand 6	U	28	33	parallel
Strand 7	U	170	176	parallel
Strand 8	U	181	190	anti-parallel
Strand 9	U	193	205	anti-parallel
Strand 10	U	208	211	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	9	10	first strand
Strand 2	U	22	23	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	245	248	first strand
Strand 2	U	228	231	parallel
Strand 3	U	265	270	parallel
Strand 4	U	295	300	parallel
Strand 5	U	320	322	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	365	366	first strand
Strand 2	U	419	422	parallel
Strand 3	U	427	432	anti-parallel
Strand 4	U	391	398	anti-parallel
Strand 5	U	455	461	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	499	500	first strand
Strand 2	U	505	506	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	510	512	first strand
Strand 2	W	72	76	anti-parallel
Strand 3	W	79	82	anti-parallel
Strand 4	W	33	37	parallel
Strand 5	W	120	125	parallel
Strand 6	W	3	8	parallel
Strand 7	W	142	148	parallel
Strand 8	W	167	173	parallel
Strand 9	W	194	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FNN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FNN