Analysis of interatomic Contacts of Structural Units in PDB entry:
9FOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FOD entry

There is 1 chain in PDB entry 9FOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9FOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
84 89Right-handed 310
Helix 4
AA4
A
102 107Right-handed alpha
Helix 5
AA5
A
108 110Right-handed 310
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
148 166Right-handed alpha
Helix 8
AA8
A
191 196Right-handed 310
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
208 217Right-handed alpha
Helix 11
AB2
A
220 222Right-handed 310
Helix 12
AB3
A
250 264Right-handed alpha
Helix 13
AB4
A
278 283Right-handed 310
Helix 14
AB5
A
294 296Right-handed 310
Helix 15
AB6
A
313 329Right-handed alpha
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There are 3 sheets in PDB entry 9FOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
64 66anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
27 33parallel
Strand 5
A
3 8parallel
Strand 6
A
92 95parallel
Strand 7
A
116 119parallel
Strand 8
A
143 145parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
236 245anti-parallel
Strand 5
A
303 311anti-parallel
Strand 6
A
289 292anti-parallel
Strand 7
A
270 273parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
236 245anti-parallel
Strand 5
A
303 311anti-parallel
Strand 6
A
297 299anti-parallel
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