Analysis of interatomic Contacts of Structural Units in PDB entry:
9FOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FOJ entry

There are 6 chains in PDB entry 9FOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ALA 496
B	SER 1	ALA 496
C	SER 1	ALA 496
D	VAL 1	ALA 74
E	VAL 1	ALA 74
F	VAL 1	ALA 74

There are 50 helices in PDB entry 9FOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	82	87	Right-handed 310
Helix 3	AA3	A	100	104	Right-handed 310
Helix 4	AA4	A	188	191	Right-handed 310
Helix 5	AA5	A	193	197	Right-handed 310
Helix 6	AA6	A	216	222	Right-handed alpha
Helix 7	AA7	A	237	240	Right-handed 310
Helix 8	AA8	A	260	268	Right-handed alpha
Helix 9	AA9	A	397	417	Right-handed alpha
Helix 10	AB1	A	418	423	Right-handed 310
Helix 11	AB2	A	429	450	Right-handed alpha
Helix 12	AB3	A	453	471	Right-handed alpha
Helix 13	AB4	A	473	490	Right-handed alpha
Helix 14	AB5	B	1	6	Right-handed 310
Helix 15	AB6	B	82	87	Right-handed 310
Helix 16	AB7	B	100	104	Right-handed 310
Helix 17	AB8	B	177	179	Right-handed 310
Helix 18	AB9	B	218	223	Right-handed alpha
Helix 19	AC1	B	237	240	Right-handed 310
Helix 20	AC2	B	260	268	Right-handed alpha
Helix 21	AC3	B	397	417	Right-handed alpha
Helix 22	AC4	B	418	423	Right-handed 310
Helix 23	AC5	B	428	449	Right-handed alpha
Helix 24	AC6	B	453	471	Right-handed alpha
Helix 25	AC7	B	473	493	Right-handed alpha
Helix 26	AC8	C	82	87	Right-handed 310
Helix 27	AC9	C	100	104	Right-handed 310
Helix 28	AD1	C	133	137	Right-handed 310
Helix 29	AD2	C	177	179	Right-handed 310
Helix 30	AD3	C	188	191	Right-handed 310
Helix 31	AD4	C	217	222	Right-handed alpha
Helix 32	AD5	C	237	240	Right-handed 310
Helix 33	AD6	C	260	268	Right-handed alpha
Helix 34	AD7	C	397	417	Right-handed alpha
Helix 35	AD8	C	418	423	Right-handed 310
Helix 36	AD9	C	429	450	Right-handed alpha
Helix 37	AE1	C	453	471	Right-handed alpha
Helix 38	AE2	C	473	490	Right-handed alpha
Helix 39	AE3	D	23	38	Right-handed alpha
Helix 40	AE4	D	38	53	Right-handed alpha
Helix 41	AE5	D	55	74	Right-handed alpha
Helix 42	AE6	E	23	38	Right-handed alpha
Helix 43	AE7	E	40	53	Right-handed alpha
Helix 44	AE8	E	55	69	Right-handed alpha
Helix 45	AE9	E	70	73	Right-handed 310
Helix 46	AF1	F	23	35	Right-handed alpha
Helix 47	AF2	F	38	53	Right-handed alpha
Helix 48	AF3	F	55	62	Right-handed alpha
Helix 49	AF4	F	62	70	Right-handed alpha
Helix 50	AF5	F	71	73	Right-handed 310

There are 27 sheets in PDB entry 9FOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	51	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	161	165	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	51	anti-parallel
Strand 4	A	280	283	anti-parallel
Strand 5	A	273	277	anti-parallel
Strand 6	A	212	213	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	287	297	anti-parallel
Strand 3	A	180	186	anti-parallel
Strand 4	A	172	175	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	126	131	anti-parallel
Strand 3	A	54	60	anti-parallel
Strand 4	A	227	228	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	73	first strand
Strand 2	A	109	121	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	254	256	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	371	375	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	363	364	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	353	first strand
Strand 2	A	342	346	anti-parallel
Strand 3	A	379	385	anti-parallel
Strand 4	A	388	394	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	31	34	parallel
Strand 3	B	41	49	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	181	186	anti-parallel
Strand 4	B	171	175	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	54	60	anti-parallel
Strand 3	B	126	131	anti-parallel
Strand 4	B	197	201	anti-parallel
Strand 5	B	212	216	anti-parallel
Strand 6	B	273	277	anti-parallel
Strand 7	B	280	283	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	73	first strand
Strand 2	B	112	121	anti-parallel
Strand 3	B	90	95	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	109	110	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	254	256	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	320	first strand
Strand 2	B	326	331	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	379	385	anti-parallel
Strand 3	B	388	394	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	368	369	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	31	35	parallel
Strand 3	C	41	51	anti-parallel
Strand 4	C	138	145	anti-parallel
Strand 5	C	161	165	anti-parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	31	35	parallel
Strand 3	C	41	51	anti-parallel
Strand 4	C	280	283	anti-parallel
Strand 5	C	273	277	anti-parallel
Strand 6	C	212	216	anti-parallel
Strand 7	C	197	201	anti-parallel
Strand 8	C	126	131	anti-parallel
Strand 9	C	54	60	anti-parallel
Strand 10	C	227	228	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	181	186	anti-parallel
Strand 4	C	172	175	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	73	first strand
Strand 2	C	112	121	anti-parallel
Strand 3	C	90	95	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	109	110	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	254	256	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	371	375	anti-parallel
Strand 4	C	356	357	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	385	anti-parallel
Strand 3	C	388	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FOJ