Analysis of interatomic Contacts of Structural Units in PDB entry:
9FOL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FOL entry

There are 4 chains in PDB entry 9FOL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	GLU 408
B	SER 4	VAL 409
C	GLY 2	GLN 409
D	VAL 5	GLY 62

There are 88 helices in PDB entry 9FOL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	7	Right-handed 310
Helix 2	AA2	A	18	28	Right-handed alpha
Helix 3	AA3	A	41	46	Right-handed 310
Helix 4	AA4	A	59	67	Right-handed alpha
Helix 5	AA5	A	78	91	Right-handed alpha
Helix 6	AA6	A	102	107	Right-handed alpha
Helix 7	AA7	A	110	115	Right-handed alpha
Helix 8	AA8	A	141	150	Right-handed alpha
Helix 9	AA9	A	151	155	Right-handed 310
Helix 10	AB1	A	168	193	Right-handed alpha
Helix 11	AB2	A	202	208	Right-handed alpha
Helix 12	AB3	A	212	221	Right-handed alpha
Helix 13	AB4	A	253	267	Right-handed alpha
Helix 14	AB5	A	271	276	Right-handed alpha
Helix 15	AB6	A	277	281	Right-handed 310
Helix 16	AB7	A	282	287	Right-handed alpha
Helix 17	AB8	A	288	304	Right-handed alpha
Helix 18	AB9	A	307	318	Right-handed alpha
Helix 19	AC1	A	327	334	Right-handed alpha
Helix 20	AC2	A	334	340	Right-handed alpha
Helix 21	AC3	A	381	389	Right-handed alpha
Helix 22	AC4	A	392	402	Right-handed alpha
Helix 23	AC5	B	21	33	Right-handed alpha
Helix 24	AC6	B	47	52	Right-handed 310
Helix 25	AC7	B	55	59	Right-handed 310
Helix 26	AC8	B	66	71	Right-handed alpha
Helix 27	AC9	B	85	99	Right-handed alpha
Helix 28	AD1	B	109	114	Right-handed alpha
Helix 29	AD2	B	117	125	Right-handed alpha
Helix 30	AD3	B	148	156	Right-handed alpha
Helix 31	AD4	B	158	162	Right-handed 310
Helix 32	AD5	B	175	179	Right-handed 310
Helix 33	AD6	B	180	201	Right-handed alpha
Helix 34	AD7	B	210	217	Right-handed alpha
Helix 35	AD8	B	219	229	Right-handed alpha
Helix 36	AD9	B	263	274	Right-handed alpha
Helix 37	AE1	B	277	286	Right-handed 310
Helix 38	AE2	B	287	294	Right-handed alpha
Helix 39	AE3	B	294	307	Right-handed alpha
Helix 40	AE4	B	310	321	Right-handed alpha
Helix 41	AE5	B	330	337	Right-handed alpha
Helix 42	AE6	B	337	343	Right-handed alpha
Helix 43	AE7	B	383	391	Right-handed alpha
Helix 44	AE8	B	395	405	Right-handed alpha
Helix 45	AE9	C	18	28	Right-handed alpha
Helix 46	AF1	C	41	46	Right-handed 310
Helix 47	AF2	C	59	67	Right-handed alpha
Helix 48	AF3	C	78	91	Right-handed alpha
Helix 49	AF4	C	102	107	Right-handed alpha
Helix 50	AF5	C	110	115	Right-handed alpha
Helix 51	AF6	C	141	150	Right-handed alpha
Helix 52	AF7	C	151	155	Right-handed 310
Helix 53	AF8	C	168	193	Right-handed alpha
Helix 54	AF9	C	202	208	Right-handed alpha
Helix 55	AG1	C	212	221	Right-handed alpha
Helix 56	AG2	C	253	255	Right-handed 310
Helix 57	AG3	C	256	267	Right-handed alpha
Helix 58	AG4	C	271	276	Right-handed 310
Helix 59	AG5	C	277	281	Right-handed 310
Helix 60	AG6	C	282	287	Right-handed alpha
Helix 61	AG7	C	288	304	Right-handed alpha
Helix 62	AG8	C	307	318	Right-handed alpha
Helix 63	AG9	C	327	334	Right-handed alpha
Helix 64	AH1	C	334	340	Right-handed alpha
Helix 65	AH2	C	381	389	Right-handed alpha
Helix 66	AH3	C	392	402	Right-handed alpha
Helix 67	AH4	D	22	33	Right-handed alpha
Helix 68	AH5	D	47	52	Right-handed 310
Helix 69	AH6	D	55	59	Right-handed 310
Helix 70	AH7	D	66	71	Right-handed alpha
Helix 71	AH8	D	87	98	Right-handed alpha
Helix 72	AH9	D	109	114	Right-handed alpha
Helix 73	AI1	D	117	125	Right-handed alpha
Helix 74	AI2	D	148	156	Right-handed alpha
Helix 75	AI3	D	158	162	Right-handed 310
Helix 76	AI4	D	175	179	Right-handed 310
Helix 77	AI5	D	180	201	Right-handed alpha
Helix 78	AI6	D	210	217	Right-handed alpha
Helix 79	AI7	D	219	229	Right-handed alpha
Helix 80	AI8	D	263	274	Right-handed alpha
Helix 81	AI9	D	277	286	Right-handed 310
Helix 82	AJ1	D	287	294	Right-handed alpha
Helix 83	AJ2	D	294	307	Right-handed alpha
Helix 84	AJ3	D	310	321	Right-handed alpha
Helix 85	AJ4	D	330	336	Right-handed alpha
Helix 86	AJ5	D	337	343	Right-handed alpha
Helix 87	AJ6	D	383	391	Right-handed alpha
Helix 88	AJ7	D	395	405	Right-handed alpha

There are 12 sheets in PDB entry 9FOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	70	74	anti-parallel
Strand 3	A	31	36	parallel
Strand 4	A	9	13	parallel
Strand 5	A	94	97	parallel
Strand 6	A	122	127	parallel
Strand 7	A	197	201	parallel
Strand 8	B	365	366	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	239	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	321	324	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	353	357	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	B	205	209	anti-parallel
Strand 3	B	129	134	parallel
Strand 4	B	101	103	parallel
Strand 5	B	13	16	parallel
Strand 6	B	36	41	parallel
Strand 7	B	77	80	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	256	260	anti-parallel
Strand 3	B	325	327	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	357	360	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	31	36	parallel
Strand 3	C	9	13	parallel
Strand 4	C	94	97	parallel
Strand 5	C	122	127	parallel
Strand 6	C	197	201	parallel
Strand 7	D	365	366	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	239	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	321	324	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	348	first strand
Strand 2	C	353	357	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	364	first strand
Strand 2	D	205	209	anti-parallel
Strand 3	D	129	134	parallel
Strand 4	D	101	104	parallel
Strand 5	D	13	16	parallel
Strand 6	D	36	40	parallel
Strand 7	D	77	79	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	249	first strand
Strand 2	D	256	260	anti-parallel
Strand 3	D	325	327	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	349	first strand
Strand 2	D	357	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FOL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FOL