Analysis of interatomic Contacts of Structural Units in PDB entry:
9FP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FP8 entry

There are 2 chains in PDB entry 9FP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ARG 143
B
 GLY 4ARG 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9FP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
48 57Right-handed alpha
Helix 3
AA3
A
100 110Right-handed alpha
Helix 4
AA4
A
110 118Right-handed alpha
Helix 5
AA5
A
129 133Right-handed 310
Helix 6
AA6
A
134 142Right-handed alpha
Helix 7
AA7
B
8 20Right-handed alpha
Helix 8
AA8
B
48 57Right-handed alpha
Helix 9
AA9
B
100 110Right-handed alpha
Helix 10
AB1
B
110 118Right-handed alpha
Helix 11
AB2
B
129 134Right-handed alpha
Helix 12
AB3
B
134 142Right-handed alpha
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There are 2 sheets in PDB entry 9FP8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
36 44parallel
Strand 3
A
24 32anti-parallel
Strand 4
A
65 75anti-parallel
Strand 5
A
84 94anti-parallel
Strand 6
A
124 127parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
36 44parallel
Strand 3
B
24 32anti-parallel
Strand 4
B
65 75anti-parallel
Strand 5
B
84 94anti-parallel
Strand 6
B
124 127parallel
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