Analysis of interatomic Contacts of Structural Units in PDB entry:
9FPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FPA entry

There are 3 chains in PDB entry 9FPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ARG 150
C
 ASN 97LEU 324
A
 ASN 97LEU 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9FPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
22 35Right-handed alpha
Helix 2
AA2
B
37 39Right-handed 310
Helix 3
AA3
B
56 60Right-handed 310
Helix 4
AA4
B
98 111Right-handed alpha
Helix 5
AA5
B
113 115Right-handed 310
Helix 6
AA6
B
132 136Right-handed 310
Helix 7
AA7
C
97 101Right-handed 310
Helix 8
AA8
C
102 108Right-handed alpha
Helix 9
AA9
C
110 122Right-handed alpha
Helix 10
AB1
C
133 139Right-handed alpha
Helix 11
AB2
C
162 172Right-handed alpha
Helix 12
AB3
C
177 193Right-handed alpha
Helix 13
AB4
C
197 206Right-handed alpha
Helix 14
AB5
C
207 210Right-handed 310
Helix 15
AB6
C
213 226Right-handed alpha
Helix 16
AB7
C
235 237Right-handed 310
Helix 17
AB8
C
243 253Right-handed alpha
Helix 18
AB9
C
310 314Right-handed 310
Helix 19
AC1
A
97 101Right-handed 310
Helix 20
AC2
A
102 108Right-handed alpha
Helix 21
AC3
A
110 122Right-handed alpha
Helix 22
AC4
A
133 139Right-handed alpha
Helix 23
AC5
A
161 172Right-handed alpha
Helix 24
AC6
A
177 194Right-handed alpha
Helix 25
AC7
A
196 206Right-handed alpha
Helix 26
AC8
A
213 226Right-handed alpha
Helix 27
AC9
A
235 237Right-handed 310
Helix 28
AD1
A
243 253Right-handed alpha
Helix 29
AD2
A
310 314Right-handed 310
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There are 4 sheets in PDB entry 9FPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
142 147parallel
Strand 4
B
117 121anti-parallel
Strand 5
B
124 125anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 233first strand
Strand 2
C
319 323anti-parallel
Strand 3
C
257 261anti-parallel
Strand 4
C
285 290anti-parallel
Strand 5
C
296 299anti-parallel
Strand 6
C
307 308anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 233first strand
Strand 2
A
319 323anti-parallel
Strand 3
A
257 262anti-parallel
Strand 4
A
284 290anti-parallel
Strand 5
A
296 299anti-parallel
Strand 6
A
307 308anti-parallel
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