Analysis of interatomic Contacts of Structural Units in PDB entry:
9FPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FPP entry

There are 4 chains in PDB entry 9FPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 42ARG 360
B
 ARG 42ARG 360
E
 ARG 42ARG 360
F
 GLY 43ARG 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9FPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 69Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
91 103Right-handed alpha
Helix 4
AA4
A
120 135Right-handed alpha
Helix 5
AA5
A
147 156Right-handed alpha
Helix 6
AA6
A
160 179Right-handed alpha
Helix 7
AA7
A
214 225Right-handed alpha
Helix 8
AA8
A
233 235Right-handed 310
Helix 9
AA9
A
237 251Right-handed alpha
Helix 10
AB1
A
254 258Right-handed 310
Helix 11
AB2
A
270 281Right-handed alpha
Helix 12
AB3
A
282 286Right-handed 310
Helix 13
AB4
A
292 301Right-handed alpha
Helix 14
AB5
A
304 310Right-handed alpha
Helix 15
AB6
A
317 331Right-handed alpha
Helix 16
AB7
A
343 355Right-handed alpha
Helix 17
AB8
A
356 359Right-handed 310
Helix 18
AB9
B
54 69Right-handed alpha
Helix 19
AC1
B
83 87Right-handed 310
Helix 20
AC2
B
91 103Right-handed alpha
Helix 21
AC3
B
120 135Right-handed alpha
Helix 22
AC4
B
147 156Right-handed alpha
Helix 23
AC5
B
160 179Right-handed alpha
Helix 24
AC6
B
214 225Right-handed alpha
Helix 25
AC7
B
233 235Right-handed 310
Helix 26
AC8
B
237 251Right-handed alpha
Helix 27
AC9
B
254 258Right-handed 310
Helix 28
AD1
B
270 281Right-handed alpha
Helix 29
AD2
B
282 286Right-handed 310
Helix 30
AD3
B
292 301Right-handed alpha
Helix 31
AD4
B
304 310Right-handed alpha
Helix 32
AD5
B
317 331Right-handed alpha
Helix 33
AD6
B
343 355Right-handed alpha
Helix 34
AD7
B
356 359Right-handed 310
Helix 35
AD8
E
54 69Right-handed alpha
Helix 36
AD9
E
83 87Right-handed 310
Helix 37
AE1
E
91 103Right-handed alpha
Helix 38
AE2
E
120 135Right-handed alpha
Helix 39
AE3
E
147 156Right-handed alpha
Helix 40
AE4
E
160 179Right-handed alpha
Helix 41
AE5
E
214 225Right-handed alpha
Helix 42
AE6
E
233 235Right-handed 310
Helix 43
AE7
E
237 251Right-handed alpha
Helix 44
AE8
E
254 258Right-handed 310
Helix 45
AE9
E
270 281Right-handed alpha
Helix 46
AF1
E
282 286Right-handed 310
Helix 47
AF2
E
292 301Right-handed alpha
Helix 48
AF3
E
304 310Right-handed alpha
Helix 49
AF4
E
317 331Right-handed alpha
Helix 50
AF5
E
343 355Right-handed alpha
Helix 51
AF6
E
356 359Right-handed 310
Helix 52
AF7
F
54 69Right-handed alpha
Helix 53
AF8
F
83 87Right-handed 310
Helix 54
AF9
F
91 103Right-handed alpha
Helix 55
AG1
F
120 135Right-handed alpha
Helix 56
AG2
F
147 156Right-handed alpha
Helix 57
AG3
F
160 179Right-handed alpha
Helix 58
AG4
F
214 225Right-handed alpha
Helix 59
AG5
F
233 235Right-handed 310
Helix 60
AG6
F
237 251Right-handed alpha
Helix 61
AG7
F
254 258Right-handed 310
Helix 62
AG8
F
270 281Right-handed alpha
Helix 63
AG9
F
282 286Right-handed 310
Helix 64
AH1
F
292 301Right-handed alpha
Helix 65
AH2
F
304 310Right-handed alpha
Helix 66
AH3
F
317 331Right-handed alpha
Helix 67
AH4
F
343 355Right-handed alpha
Helix 68
AH5
F
356 359Right-handed 310
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There are 4 sheets in PDB entry 9FPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
259 267parallel
Strand 3
A
334 338parallel
Strand 4
A
45 48parallel
Strand 5
A
72 75parallel
Strand 6
A
107 110parallel
Strand 7
A
139 143parallel
Strand 8
A
208 211parallel
Strand 9
A
227 231parallel
Strand 10
A
259 267parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
259 267parallel
Strand 3
B
334 338parallel
Strand 4
B
45 48parallel
Strand 5
B
72 75parallel
Strand 6
B
107 110parallel
Strand 7
B
139 143parallel
Strand 8
B
208 211parallel
Strand 9
B
227 231parallel
Strand 10
B
259 267parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
313 314first strand
Strand 2
E
259 267parallel
Strand 3
E
334 338parallel
Strand 4
E
45 48parallel
Strand 5
E
72 75parallel
Strand 6
E
107 110parallel
Strand 7
E
139 143parallel
Strand 8
E
208 211parallel
Strand 9
E
227 231parallel
Strand 10
E
259 267parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
313 314first strand
Strand 2
F
259 267parallel
Strand 3
F
334 338parallel
Strand 4
F
45 48parallel
Strand 5
F
72 75parallel
Strand 6
F
107 110parallel
Strand 7
F
139 143parallel
Strand 8
F
208 211parallel
Strand 9
F
227 231parallel
Strand 10
F
259 267parallel
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