Analysis of interatomic Contacts of Structural Units in PDB entry:
9FQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FQ3 entry

There are 10 chains in PDB entry 9FQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 461	LEU 601
B	PRO 461	LEU 601
C	GLU 1	THR 125
D	VAL 3	THR 108
E	GLU 1	THR 125
F	VAL 3	THR 108
G	VAL 1	SER 124
H	PRO 1	LYS 99
I	VAL 1	SER 124
J	PRO 1	LYS 99

There are 9 helices in PDB entry 9FQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	91	95	Right-handed 310
Helix 2	AA2	D	26	31	Right-handed alpha
Helix 3	AA3	E	66	69	Right-handed 310
Helix 4	AA4	E	91	95	Right-handed 310
Helix 5	AA5	F	25	31	Right-handed alpha
Helix 6	AA6	G	27	31	Right-handed 310
Helix 7	AA7	G	86	90	Right-handed 310
Helix 8	AA8	H	72	76	Right-handed 310
Helix 9	AA9	J	72	76	Right-handed 310

There are 28 sheets in PDB entry 9FQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	465	first strand
Strand 2	A	520	521	parallel
Strand 3	A	524	525	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	498	502	anti-parallel
Strand 3	A	470	478	anti-parallel
Strand 4	A	593	600	anti-parallel
Strand 5	A	542	547	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	530	first strand
Strand 2	A	535	537	anti-parallel
Strand 3	A	570	572	anti-parallel
Strand 4	A	579	580	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	520	521	parallel
Strand 3	B	524	525	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	498	502	anti-parallel
Strand 3	B	470	478	anti-parallel
Strand 4	B	593	600	anti-parallel
Strand 5	B	546	547	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	536	537	anti-parallel
Strand 3	B	570	572	anti-parallel
Strand 4	B	579	580	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	541	first strand
Strand 2	B	567	568	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	39	43	anti-parallel
Strand 3	C	97	101	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	82	84	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	105	108	parallel
Strand 3	D	86	90	anti-parallel
Strand 4	D	35	39	anti-parallel
Strand 5	D	46	50	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	71	74	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	21	25	anti-parallel
Strand 3	E	82	86	anti-parallel
Strand 4	E	73	77	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	64	first strand
Strand 2	E	49	56	anti-parallel
Strand 3	E	39	43	anti-parallel
Strand 4	E	97	101	anti-parallel
Strand 5	E	122	123	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	10	first strand
Strand 2	F	106	107	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	71	76	anti-parallel
Strand 3	F	64	68	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	49	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	98	101	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	17	24	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	119	123	parallel
Strand 3	G	91	98	anti-parallel
Strand 4	G	32	38	anti-parallel
Strand 5	G	44	50	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	119	123	parallel
Strand 3	G	91	98	anti-parallel
Strand 4	G	114	115	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	94	98	parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	26	31	anti-parallel
Strand 5	H	38	42	anti-parallel
Strand 6	H	46	47	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	94	98	parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	89	90	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	17	first strand
Strand 2	H	63	68	anti-parallel
Strand 3	H	55	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	6	first strand
Strand 2	I	16	24	anti-parallel
Strand 3	I	77	83	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	11	first strand
Strand 2	I	119	123	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	32	38	anti-parallel
Strand 5	I	44	50	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	11	first strand
Strand 2	I	119	123	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	114	115	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	47	first strand
Strand 2	J	38	42	anti-parallel
Strand 3	J	26	31	anti-parallel
Strand 4	J	78	83	anti-parallel
Strand 5	J	89	90	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	47	first strand
Strand 2	J	38	42	anti-parallel
Strand 3	J	26	31	anti-parallel
Strand 4	J	78	83	anti-parallel
Strand 5	J	94	95	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	60	first strand
Strand 2	J	63	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FQ3