Analysis of interatomic Contacts of Structural Units in PDB entry:
9FQC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FQC entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There is 1 chain in PDB entry 9FQC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1GLN 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9FQC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
51 63Right-handed alpha
Helix 3
AA3
A
95 103Right-handed alpha
Helix 4
AA4
A
106 119Right-handed alpha
Helix 5
AA5
A
123 134Right-handed alpha
Helix 6
AA6
A
141 151Right-handed alpha
Helix 7
AA7
A
156 167Right-handed alpha
Helix 8
AA8
A
179 190Right-handed alpha
Helix 9
AA9
A
216 231Right-handed alpha
Helix 10
AB1
A
234 236Right-handed 310
Helix 11
AB2
A
244 246Right-handed 310
Helix 12
AB3
A
247 254Right-handed alpha
Helix 13
AB4
A
263 268Right-handed alpha
Helix 14
AB5
A
280 286Right-handed alpha
Helix 15
AB6
A
289 293Right-handed 310
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There are 3 sheets in PDB entry 9FQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
41 45anti-parallel
Strand 3
A
3 9anti-parallel
Strand 4
A
68 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
170 178parallel
Strand 3
A
82 85parallel
Strand 4
A
238 242parallel
Strand 5
A
256 260parallel
Strand 6
A
272 274parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
206 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il