Analysis of interatomic Contacts of Structural Units in PDB entry:
9FSM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FSM entry

There are 10 chains in PDB entry 9FSM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 36	GLY 261
B	CYS 36	GLY 261
C	CYS 36	GLY 261
D	CYS 36	GLY 261
E	CYS 36	GLY 261
F	CYS 36	GLY 261
G	CYS 36	GLY 261
H	CYS 36	GLY 261
I	CYS 36	GLY 261
J	CYS 36	GLY 261

There are 70 helices in PDB entry 9FSM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	45	Right-handed alpha
Helix 2	AA2	A	82	94	Right-handed alpha
Helix 3	AA3	A	122	126	Right-handed 310
Helix 4	AA4	A	131	140	Right-handed alpha
Helix 5	AA5	A	141	146	Right-handed 310
Helix 6	AA6	A	152	173	Right-handed alpha
Helix 7	AA7	A	238	257	Right-handed alpha
Helix 8	AA8	B	37	45	Right-handed alpha
Helix 9	AA9	B	82	94	Right-handed alpha
Helix 10	AB1	B	122	126	Right-handed 310
Helix 11	AB2	B	131	140	Right-handed alpha
Helix 12	AB3	B	141	146	Right-handed 310
Helix 13	AB4	B	152	173	Right-handed alpha
Helix 14	AB5	B	238	259	Right-handed alpha
Helix 15	AB6	C	37	45	Right-handed alpha
Helix 16	AB7	C	82	94	Right-handed alpha
Helix 17	AB8	C	122	126	Right-handed 310
Helix 18	AB9	C	131	140	Right-handed alpha
Helix 19	AC1	C	141	146	Right-handed 310
Helix 20	AC2	C	152	173	Right-handed alpha
Helix 21	AC3	C	238	259	Right-handed alpha
Helix 22	AC4	D	37	45	Right-handed alpha
Helix 23	AC5	D	82	94	Right-handed alpha
Helix 24	AC6	D	122	126	Right-handed 310
Helix 25	AC7	D	131	140	Right-handed alpha
Helix 26	AC8	D	141	146	Right-handed 310
Helix 27	AC9	D	152	173	Right-handed alpha
Helix 28	AD1	D	238	259	Right-handed alpha
Helix 29	AD2	E	37	45	Right-handed alpha
Helix 30	AD3	E	82	94	Right-handed alpha
Helix 31	AD4	E	122	126	Right-handed 310
Helix 32	AD5	E	131	140	Right-handed alpha
Helix 33	AD6	E	141	146	Right-handed 310
Helix 34	AD7	E	152	173	Right-handed alpha
Helix 35	AD8	E	238	259	Right-handed alpha
Helix 36	AD9	F	37	45	Right-handed alpha
Helix 37	AE1	F	82	94	Right-handed alpha
Helix 38	AE2	F	122	126	Right-handed 310
Helix 39	AE3	F	131	140	Right-handed alpha
Helix 40	AE4	F	141	146	Right-handed 310
Helix 41	AE5	F	152	173	Right-handed alpha
Helix 42	AE6	F	238	257	Right-handed alpha
Helix 43	AE7	G	37	45	Right-handed alpha
Helix 44	AE8	G	82	94	Right-handed alpha
Helix 45	AE9	G	122	126	Right-handed 310
Helix 46	AF1	G	131	140	Right-handed alpha
Helix 47	AF2	G	141	146	Right-handed 310
Helix 48	AF3	G	152	173	Right-handed alpha
Helix 49	AF4	G	238	259	Right-handed alpha
Helix 50	AF5	H	37	45	Right-handed alpha
Helix 51	AF6	H	82	94	Right-handed alpha
Helix 52	AF7	H	122	126	Right-handed 310
Helix 53	AF8	H	131	140	Right-handed alpha
Helix 54	AF9	H	141	146	Right-handed 310
Helix 55	AG1	H	152	173	Right-handed alpha
Helix 56	AG2	H	238	259	Right-handed alpha
Helix 57	AG3	I	37	45	Right-handed alpha
Helix 58	AG4	I	82	94	Right-handed alpha
Helix 59	AG5	I	122	126	Right-handed 310
Helix 60	AG6	I	131	140	Right-handed alpha
Helix 61	AG7	I	141	146	Right-handed 310
Helix 62	AG8	I	152	173	Right-handed alpha
Helix 63	AG9	I	238	259	Right-handed alpha
Helix 64	AH1	J	37	45	Right-handed alpha
Helix 65	AH2	J	82	94	Right-handed alpha
Helix 66	AH3	J	122	126	Right-handed 310
Helix 67	AH4	J	131	140	Right-handed alpha
Helix 68	AH5	J	141	146	Right-handed 310
Helix 69	AH6	J	152	173	Right-handed alpha
Helix 70	AH7	J	238	259	Right-handed alpha

There are 11 sheets in PDB entry 9FSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	222	235	anti-parallel
Strand 3	A	176	189	anti-parallel
Strand 4	A	107	120	anti-parallel
Strand 5	A	67	74	parallel
Strand 6	A	97	98	parallel

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There are 21 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	205	first strand
Strand 2	A	209	219	anti-parallel
Strand 3	B	195	205	anti-parallel
Strand 4	B	209	219	anti-parallel
Strand 5	C	195	205	anti-parallel
Strand 6	C	209	219	anti-parallel
Strand 7	D	195	205	anti-parallel
Strand 8	D	209	219	anti-parallel
Strand 9	E	195	205	anti-parallel
Strand 10	E	209	219	anti-parallel
Strand 11	F	195	205	anti-parallel
Strand 12	F	209	219	anti-parallel
Strand 13	G	195	205	anti-parallel
Strand 14	G	209	219	anti-parallel
Strand 15	H	195	205	anti-parallel
Strand 16	H	209	219	anti-parallel
Strand 17	I	195	205	anti-parallel
Strand 18	I	209	219	anti-parallel
Strand 19	J	195	205	anti-parallel
Strand 20	J	209	219	anti-parallel
Strand 21	A	195	205	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	54	first strand
Strand 2	B	222	235	anti-parallel
Strand 3	B	176	189	anti-parallel
Strand 4	B	107	120	anti-parallel
Strand 5	B	67	74	parallel
Strand 6	B	97	98	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	54	first strand
Strand 2	C	222	235	anti-parallel
Strand 3	C	176	189	anti-parallel
Strand 4	C	107	120	anti-parallel
Strand 5	C	67	74	parallel
Strand 6	C	97	98	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	54	first strand
Strand 2	D	222	235	anti-parallel
Strand 3	D	176	189	anti-parallel
Strand 4	D	107	120	anti-parallel
Strand 5	D	67	74	parallel
Strand 6	D	97	98	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	54	first strand
Strand 2	E	222	235	anti-parallel
Strand 3	E	176	189	anti-parallel
Strand 4	E	107	120	anti-parallel
Strand 5	E	67	74	parallel
Strand 6	E	97	98	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	54	first strand
Strand 2	F	222	235	anti-parallel
Strand 3	F	176	189	anti-parallel
Strand 4	F	107	120	anti-parallel
Strand 5	F	67	74	parallel
Strand 6	F	97	98	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	54	first strand
Strand 2	G	222	235	anti-parallel
Strand 3	G	176	189	anti-parallel
Strand 4	G	107	120	anti-parallel
Strand 5	G	67	74	parallel
Strand 6	G	97	98	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	54	first strand
Strand 2	H	222	235	anti-parallel
Strand 3	H	176	189	anti-parallel
Strand 4	H	107	120	anti-parallel
Strand 5	H	67	74	parallel
Strand 6	H	97	98	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	49	54	first strand
Strand 2	I	222	235	anti-parallel
Strand 3	I	176	189	anti-parallel
Strand 4	I	107	120	anti-parallel
Strand 5	I	67	74	parallel
Strand 6	I	97	98	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	54	first strand
Strand 2	J	222	235	anti-parallel
Strand 3	J	176	189	anti-parallel
Strand 4	J	107	120	anti-parallel
Strand 5	J	67	74	parallel
Strand 6	J	97	98	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FSM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FSM