Analysis of interatomic Contacts of Structural Units in PDB entry:
9FTH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FTH entry

There are 5 chains in PDB entry 9FTH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 35	PHE 636
A	GLU 35	PHE 636
C	GLU 35	PHE 636
D	GLU 35	PHE 636
E	GLU 35	PHE 636

There are 50 helices in PDB entry 9FTH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	88	98	Right-handed alpha
Helix 2	AA2	B	102	118	Right-handed alpha
Helix 3	AA3	B	313	317	Right-handed 310
Helix 4	AA4	B	367	372	Right-handed alpha
Helix 5	AA5	B	381	391	Right-handed alpha
Helix 6	AA6	B	515	522	Right-handed alpha
Helix 7	AA7	B	522	537	Right-handed alpha
Helix 8	AA8	B	543	565	Right-handed alpha
Helix 9	AA9	B	574	604	Right-handed alpha
Helix 10	AB1	B	605	636	Right-handed alpha
Helix 11	AB2	A	88	98	Right-handed alpha
Helix 12	AB3	A	102	118	Right-handed alpha
Helix 13	AB4	A	313	317	Right-handed 310
Helix 14	AB5	A	367	372	Right-handed alpha
Helix 15	AB6	A	381	391	Right-handed alpha
Helix 16	AB7	A	515	522	Right-handed alpha
Helix 17	AB8	A	522	537	Right-handed alpha
Helix 18	AB9	A	543	565	Right-handed alpha
Helix 19	AC1	A	574	604	Right-handed alpha
Helix 20	AC2	A	605	636	Right-handed alpha
Helix 21	AC3	C	88	98	Right-handed alpha
Helix 22	AC4	C	102	118	Right-handed alpha
Helix 23	AC5	C	313	317	Right-handed 310
Helix 24	AC6	C	367	372	Right-handed alpha
Helix 25	AC7	C	381	391	Right-handed alpha
Helix 26	AC8	C	515	522	Right-handed alpha
Helix 27	AC9	C	522	537	Right-handed alpha
Helix 28	AD1	C	543	565	Right-handed alpha
Helix 29	AD2	C	574	604	Right-handed alpha
Helix 30	AD3	C	605	636	Right-handed alpha
Helix 31	AD4	D	88	98	Right-handed alpha
Helix 32	AD5	D	102	118	Right-handed alpha
Helix 33	AD6	D	313	317	Right-handed 310
Helix 34	AD7	D	367	372	Right-handed alpha
Helix 35	AD8	D	381	391	Right-handed alpha
Helix 36	AD9	D	515	522	Right-handed alpha
Helix 37	AE1	D	522	537	Right-handed alpha
Helix 38	AE2	D	543	565	Right-handed alpha
Helix 39	AE3	D	574	604	Right-handed alpha
Helix 40	AE4	D	605	636	Right-handed alpha
Helix 41	AE5	E	88	98	Right-handed alpha
Helix 42	AE6	E	102	118	Right-handed alpha
Helix 43	AE7	E	313	317	Right-handed 310
Helix 44	AE8	E	367	372	Right-handed alpha
Helix 45	AE9	E	381	391	Right-handed alpha
Helix 46	AF1	E	515	522	Right-handed alpha
Helix 47	AF2	E	522	537	Right-handed alpha
Helix 48	AF3	E	543	565	Right-handed alpha
Helix 49	AF4	E	574	604	Right-handed alpha
Helix 50	AF5	E	605	636	Right-handed alpha

There are 30 sheets in PDB entry 9FTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	135	first strand
Strand 2	B	64	73	anti-parallel
Strand 3	B	166	174	anti-parallel
Strand 4	B	37	45	anti-parallel
Strand 5	B	187	188	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	58	first strand
Strand 2	B	141	148	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	120	121	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	212	first strand
Strand 2	B	298	305	anti-parallel
Strand 3	B	231	238	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	261	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	222	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	246	250	anti-parallel
Strand 4	B	256	259	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	407	415	anti-parallel
Strand 3	B	420	432	anti-parallel
Strand 4	B	348	360	anti-parallel
Strand 5	B	329	343	anti-parallel
Strand 6	B	462	466	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	445	454	anti-parallel
Strand 3	B	500	513	anti-parallel
Strand 4	B	482	496	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	135	first strand
Strand 2	A	64	73	anti-parallel
Strand 3	A	166	174	anti-parallel
Strand 4	A	37	45	anti-parallel
Strand 5	A	187	188	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	58	first strand
Strand 2	A	141	148	anti-parallel
Strand 3	A	78	82	anti-parallel
Strand 4	A	120	121	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	212	first strand
Strand 2	A	298	305	anti-parallel
Strand 3	A	231	238	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	261	262	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	222	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	246	250	anti-parallel
Strand 4	A	256	259	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	407	415	anti-parallel
Strand 3	A	420	432	anti-parallel
Strand 4	A	348	360	anti-parallel
Strand 5	A	329	343	anti-parallel
Strand 6	A	462	466	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	445	454	anti-parallel
Strand 3	A	500	513	anti-parallel
Strand 4	A	482	496	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	135	first strand
Strand 2	C	64	73	anti-parallel
Strand 3	C	166	174	anti-parallel
Strand 4	C	37	45	anti-parallel
Strand 5	C	187	188	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	58	first strand
Strand 2	C	141	148	anti-parallel
Strand 3	C	78	82	anti-parallel
Strand 4	C	120	121	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	212	first strand
Strand 2	C	298	305	anti-parallel
Strand 3	C	231	238	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	261	262	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	222	first strand
Strand 2	C	283	287	anti-parallel
Strand 3	C	246	250	anti-parallel
Strand 4	C	256	259	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	407	415	anti-parallel
Strand 3	C	420	432	anti-parallel
Strand 4	C	348	360	anti-parallel
Strand 5	C	329	343	anti-parallel
Strand 6	C	462	466	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	445	454	anti-parallel
Strand 3	C	500	513	anti-parallel
Strand 4	C	482	496	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	135	first strand
Strand 2	D	64	73	anti-parallel
Strand 3	D	166	174	anti-parallel
Strand 4	D	37	45	anti-parallel
Strand 5	D	187	188	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	58	first strand
Strand 2	D	141	148	anti-parallel
Strand 3	D	78	82	anti-parallel
Strand 4	D	120	121	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	212	first strand
Strand 2	D	298	305	anti-parallel
Strand 3	D	231	238	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	261	262	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	222	first strand
Strand 2	D	283	287	anti-parallel
Strand 3	D	246	250	anti-parallel
Strand 4	D	256	259	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	379	first strand
Strand 2	D	407	415	anti-parallel
Strand 3	D	420	432	anti-parallel
Strand 4	D	348	360	anti-parallel
Strand 5	D	329	343	anti-parallel
Strand 6	D	462	466	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	445	454	anti-parallel
Strand 3	D	500	513	anti-parallel
Strand 4	D	482	496	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	135	first strand
Strand 2	E	64	73	anti-parallel
Strand 3	E	166	174	anti-parallel
Strand 4	E	37	45	anti-parallel
Strand 5	E	187	188	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	58	first strand
Strand 2	E	141	148	anti-parallel
Strand 3	E	78	82	anti-parallel
Strand 4	E	120	121	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	212	first strand
Strand 2	E	298	305	anti-parallel
Strand 3	E	231	238	anti-parallel
Strand 4	E	269	274	anti-parallel
Strand 5	E	261	262	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	222	first strand
Strand 2	E	283	287	anti-parallel
Strand 3	E	246	250	anti-parallel
Strand 4	E	256	259	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	379	first strand
Strand 2	E	407	415	anti-parallel
Strand 3	E	420	432	anti-parallel
Strand 4	E	348	360	anti-parallel
Strand 5	E	329	343	anti-parallel
Strand 6	E	462	466	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	445	454	anti-parallel
Strand 3	E	500	513	anti-parallel
Strand 4	E	482	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FTH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FTH