Analysis of interatomic Contacts of Structural Units in PDB entry:
9FTI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FTI entry

There are 5 chains in PDB entry 9FTI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 39	PHE 636
A	GLN 39	PHE 636
C	GLN 39	PHE 636
D	GLN 39	PHE 636
E	GLN 39	PHE 636

There are 55 helices in PDB entry 9FTI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	88	98	Right-handed alpha
Helix 2	AA2	B	105	118	Right-handed alpha
Helix 3	AA3	B	381	385	Right-handed 310
Helix 4	AA4	B	386	391	Right-handed alpha
Helix 5	AA5	B	517	522	Right-handed alpha
Helix 6	AA6	B	522	536	Right-handed alpha
Helix 7	AA7	B	537	539	Right-handed 310
Helix 8	AA8	B	543	564	Right-handed alpha
Helix 9	AA9	B	565	567	Right-handed 310
Helix 10	AB1	B	575	604	Right-handed alpha
Helix 11	AB2	B	605	636	Right-handed alpha
Helix 12	AB3	A	88	98	Right-handed alpha
Helix 13	AB4	A	105	118	Right-handed alpha
Helix 14	AB5	A	381	385	Right-handed 310
Helix 15	AB6	A	386	391	Right-handed alpha
Helix 16	AB7	A	517	522	Right-handed alpha
Helix 17	AB8	A	522	536	Right-handed alpha
Helix 18	AB9	A	537	539	Right-handed 310
Helix 19	AC1	A	543	564	Right-handed alpha
Helix 20	AC2	A	565	567	Right-handed 310
Helix 21	AC3	A	575	604	Right-handed alpha
Helix 22	AC4	A	605	636	Right-handed alpha
Helix 23	AC5	C	88	98	Right-handed alpha
Helix 24	AC6	C	105	118	Right-handed alpha
Helix 25	AC7	C	381	385	Right-handed 310
Helix 26	AC8	C	386	391	Right-handed alpha
Helix 27	AC9	C	517	522	Right-handed alpha
Helix 28	AD1	C	522	536	Right-handed alpha
Helix 29	AD2	C	537	539	Right-handed 310
Helix 30	AD3	C	543	564	Right-handed alpha
Helix 31	AD4	C	565	567	Right-handed 310
Helix 32	AD5	C	575	604	Right-handed alpha
Helix 33	AD6	C	605	636	Right-handed alpha
Helix 34	AD7	D	88	98	Right-handed alpha
Helix 35	AD8	D	105	118	Right-handed alpha
Helix 36	AD9	D	381	385	Right-handed 310
Helix 37	AE1	D	386	391	Right-handed alpha
Helix 38	AE2	D	517	522	Right-handed alpha
Helix 39	AE3	D	522	536	Right-handed alpha
Helix 40	AE4	D	537	539	Right-handed 310
Helix 41	AE5	D	543	564	Right-handed alpha
Helix 42	AE6	D	565	567	Right-handed 310
Helix 43	AE7	D	575	604	Right-handed alpha
Helix 44	AE8	D	605	636	Right-handed alpha
Helix 45	AE9	E	88	98	Right-handed alpha
Helix 46	AF1	E	105	118	Right-handed alpha
Helix 47	AF2	E	381	385	Right-handed 310
Helix 48	AF3	E	386	391	Right-handed alpha
Helix 49	AF4	E	517	522	Right-handed alpha
Helix 50	AF5	E	522	536	Right-handed alpha
Helix 51	AF6	E	537	539	Right-handed 310
Helix 52	AF7	E	543	564	Right-handed alpha
Helix 53	AF8	E	565	567	Right-handed 310
Helix 54	AF9	E	575	604	Right-handed alpha
Helix 55	AG1	E	605	636	Right-handed alpha

There are 35 sheets in PDB entry 9FTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	166	171	anti-parallel
Strand 3	B	68	73	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	148	149	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	300	306	anti-parallel
Strand 3	B	234	236	anti-parallel
Strand 4	B	269	271	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	282	287	anti-parallel
Strand 3	B	246	251	anti-parallel
Strand 4	B	256	259	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	332	first strand
Strand 2	B	462	466	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	343	first strand
Strand 2	B	348	359	anti-parallel
Strand 3	B	421	432	anti-parallel
Strand 4	B	407	415	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	447	454	anti-parallel
Strand 3	B	500	513	anti-parallel
Strand 4	B	482	496	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	45	first strand
Strand 2	A	166	171	anti-parallel
Strand 3	A	68	73	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	148	149	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	300	306	anti-parallel
Strand 3	A	234	236	anti-parallel
Strand 4	A	269	271	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	282	287	anti-parallel
Strand 3	A	246	251	anti-parallel
Strand 4	A	256	259	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	332	first strand
Strand 2	A	462	466	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	343	first strand
Strand 2	A	348	359	anti-parallel
Strand 3	A	421	432	anti-parallel
Strand 4	A	407	415	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	447	454	anti-parallel
Strand 3	A	500	513	anti-parallel
Strand 4	A	482	496	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	45	first strand
Strand 2	C	166	171	anti-parallel
Strand 3	C	68	73	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	148	149	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	210	first strand
Strand 2	C	300	306	anti-parallel
Strand 3	C	234	236	anti-parallel
Strand 4	C	269	271	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	282	287	anti-parallel
Strand 3	C	246	251	anti-parallel
Strand 4	C	256	259	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	332	first strand
Strand 2	C	462	466	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	343	first strand
Strand 2	C	348	359	anti-parallel
Strand 3	C	421	432	anti-parallel
Strand 4	C	407	415	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	447	454	anti-parallel
Strand 3	C	500	513	anti-parallel
Strand 4	C	482	496	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	45	first strand
Strand 2	D	166	171	anti-parallel
Strand 3	D	68	73	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	148	149	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	210	first strand
Strand 2	D	300	306	anti-parallel
Strand 3	D	234	236	anti-parallel
Strand 4	D	269	271	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	220	first strand
Strand 2	D	282	287	anti-parallel
Strand 3	D	246	251	anti-parallel
Strand 4	D	256	259	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	332	first strand
Strand 2	D	462	466	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	343	first strand
Strand 2	D	348	359	anti-parallel
Strand 3	D	421	432	anti-parallel
Strand 4	D	407	415	anti-parallel
Strand 5	D	376	379	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	447	454	anti-parallel
Strand 3	D	500	513	anti-parallel
Strand 4	D	482	496	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	45	first strand
Strand 2	E	166	171	anti-parallel
Strand 3	E	68	73	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	148	149	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	210	first strand
Strand 2	E	300	306	anti-parallel
Strand 3	E	234	236	anti-parallel
Strand 4	E	269	271	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	220	first strand
Strand 2	E	282	287	anti-parallel
Strand 3	E	246	251	anti-parallel
Strand 4	E	256	259	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	332	first strand
Strand 2	E	462	466	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	334	343	first strand
Strand 2	E	348	359	anti-parallel
Strand 3	E	421	432	anti-parallel
Strand 4	E	407	415	anti-parallel
Strand 5	E	376	379	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	447	454	anti-parallel
Strand 3	E	500	513	anti-parallel
Strand 4	E	482	496	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FTI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FTI