Analysis of interatomic Contacts of Structural Units in PDB entry:
9FTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FTJ entry

There are 5 chains in PDB entry 9FTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 326	HIS 639
B	GLU 326	HIS 639
C	GLU 326	HIS 639
D	GLU 326	HIS 639
E	GLU 326	HIS 639

There are 50 helices in PDB entry 9FTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	361	365	Right-handed 310
Helix 2	AA2	A	367	372	Right-handed alpha
Helix 3	AA3	A	382	391	Right-handed alpha
Helix 4	AA4	A	515	522	Right-handed alpha
Helix 5	AA5	A	522	536	Right-handed alpha
Helix 6	AA6	A	537	539	Right-handed 310
Helix 7	AA7	A	542	564	Right-handed alpha
Helix 8	AA8	A	565	567	Right-handed 310
Helix 9	AA9	A	574	604	Right-handed alpha
Helix 10	AB1	A	605	637	Right-handed alpha
Helix 11	AB2	B	361	365	Right-handed 310
Helix 12	AB3	B	367	372	Right-handed alpha
Helix 13	AB4	B	382	391	Right-handed alpha
Helix 14	AB5	B	515	522	Right-handed alpha
Helix 15	AB6	B	522	536	Right-handed alpha
Helix 16	AB7	B	537	539	Right-handed 310
Helix 17	AB8	B	542	564	Right-handed alpha
Helix 18	AB9	B	565	567	Right-handed 310
Helix 19	AC1	B	574	604	Right-handed alpha
Helix 20	AC2	B	605	637	Right-handed alpha
Helix 21	AC3	C	361	365	Right-handed 310
Helix 22	AC4	C	367	372	Right-handed alpha
Helix 23	AC5	C	382	391	Right-handed alpha
Helix 24	AC6	C	515	522	Right-handed alpha
Helix 25	AC7	C	522	536	Right-handed alpha
Helix 26	AC8	C	537	539	Right-handed 310
Helix 27	AC9	C	542	564	Right-handed alpha
Helix 28	AD1	C	565	567	Right-handed 310
Helix 29	AD2	C	574	604	Right-handed alpha
Helix 30	AD3	C	605	637	Right-handed alpha
Helix 31	AD4	D	361	365	Right-handed 310
Helix 32	AD5	D	367	372	Right-handed alpha
Helix 33	AD6	D	382	391	Right-handed alpha
Helix 34	AD7	D	515	522	Right-handed alpha
Helix 35	AD8	D	522	536	Right-handed alpha
Helix 36	AD9	D	537	539	Right-handed 310
Helix 37	AE1	D	542	564	Right-handed alpha
Helix 38	AE2	D	565	567	Right-handed 310
Helix 39	AE3	D	574	604	Right-handed alpha
Helix 40	AE4	D	605	637	Right-handed alpha
Helix 41	AE5	E	361	365	Right-handed 310
Helix 42	AE6	E	367	372	Right-handed alpha
Helix 43	AE7	E	382	391	Right-handed alpha
Helix 44	AE8	E	515	522	Right-handed alpha
Helix 45	AE9	E	522	536	Right-handed alpha
Helix 46	AF1	E	537	539	Right-handed 310
Helix 47	AF2	E	542	564	Right-handed alpha
Helix 48	AF3	E	565	567	Right-handed 310
Helix 49	AF4	E	574	604	Right-handed alpha
Helix 50	AF5	E	605	637	Right-handed alpha

There are 10 sheets in PDB entry 9FTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	407	415	anti-parallel
Strand 3	A	421	432	anti-parallel
Strand 4	A	348	359	anti-parallel
Strand 5	A	328	338	anti-parallel
Strand 6	A	461	466	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	399	first strand
Strand 2	A	446	454	anti-parallel
Strand 3	A	501	512	anti-parallel
Strand 4	A	483	495	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	407	415	anti-parallel
Strand 3	B	421	432	anti-parallel
Strand 4	B	348	359	anti-parallel
Strand 5	B	328	338	anti-parallel
Strand 6	B	461	466	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	399	first strand
Strand 2	B	446	454	anti-parallel
Strand 3	B	501	512	anti-parallel
Strand 4	B	483	495	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	407	415	anti-parallel
Strand 3	C	421	432	anti-parallel
Strand 4	C	348	359	anti-parallel
Strand 5	C	328	338	anti-parallel
Strand 6	C	461	466	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	446	454	anti-parallel
Strand 3	C	501	512	anti-parallel
Strand 4	C	483	495	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	376	379	first strand
Strand 2	D	407	415	anti-parallel
Strand 3	D	421	432	anti-parallel
Strand 4	D	348	359	anti-parallel
Strand 5	D	328	338	anti-parallel
Strand 6	D	461	466	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	399	first strand
Strand 2	D	446	454	anti-parallel
Strand 3	D	501	512	anti-parallel
Strand 4	D	483	495	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	379	first strand
Strand 2	E	407	415	anti-parallel
Strand 3	E	421	432	anti-parallel
Strand 4	E	348	359	anti-parallel
Strand 5	E	328	338	anti-parallel
Strand 6	E	461	466	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	399	first strand
Strand 2	E	446	454	anti-parallel
Strand 3	E	501	512	anti-parallel
Strand 4	E	483	495	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FTJ