Analysis of interatomic Contacts of Structural Units in PDB entry:
9FUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FUT entry

There are 2 chains in PDB entry 9FUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12GLN 574
B
 THR 12GLN 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9FUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
23 47Right-handed alpha
Helix 3
AA3
A
47 55Right-handed alpha
Helix 4
AA4
A
65 110Right-handed alpha
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
122 164Right-handed alpha
Helix 7
AA7
A
164 212Right-handed alpha
Helix 8
AA8
A
213 218Right-handed alpha
Helix 9
AA9
A
222 272Right-handed alpha
Helix 10
AB1
A
280 294Right-handed alpha
Helix 11
AB2
A
294 323Right-handed alpha
Helix 12
AB3
A
383 390Right-handed alpha
Helix 13
AB4
A
411 419Right-handed alpha
Helix 14
AB5
A
432 438Right-handed alpha
Helix 15
AB6
A
446 458Right-handed alpha
Helix 16
AB7
A
459 466Right-handed alpha
Helix 17
AB8
A
482 498Right-handed alpha
Helix 18
AB9
A
514 528Right-handed alpha
Helix 19
AC1
A
539 545Right-handed alpha
Helix 20
AC2
A
561 568Right-handed alpha
Helix 21
AC3
B
13 21Right-handed alpha
Helix 22
AC4
B
23 54Right-handed alpha
Helix 23
AC5
B
60 67Right-handed alpha
Helix 24
AC6
B
67 110Right-handed alpha
Helix 25
AC7
B
112 117Right-handed alpha
Helix 26
AC8
B
122 212Right-handed alpha
Helix 27
AC9
B
213 220Right-handed alpha
Helix 28
AD1
B
223 270Right-handed alpha
Helix 29
AD2
B
280 294Right-handed alpha
Helix 30
AD3
B
294 324Right-handed alpha
Helix 31
AD4
B
383 391Right-handed alpha
Helix 32
AD5
B
411 418Right-handed alpha
Helix 33
AD6
B
432 437Right-handed alpha
Helix 34
AD7
B
446 457Right-handed alpha
Helix 35
AD8
B
459 465Right-handed alpha
Helix 36
AD9
B
468 472Right-handed 310
Helix 37
AE1
B
482 496Right-handed alpha
Helix 38
AE2
B
514 528Right-handed alpha
Helix 39
AE3
B
539 545Right-handed alpha
Helix 40
AE4
B
561 568Right-handed alpha
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There are 6 sheets in PDB entry 9FUT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 366first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
397 402anti-parallel
Strand 4
A
405 406anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
501 505parallel
Strand 3
A
531 535parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 552first strand
Strand 2
A
555 558anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 365first strand
Strand 2
B
342 348anti-parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
405 406anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
531 535parallel
Strand 3
B
501 504parallel
Strand 4
B
419 422parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 552first strand
Strand 2
B
555 556anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il