Analysis of interatomic Contacts of Structural Units in PDB entry:
9FUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FUW entry

There are 2 chains in PDB entry 9FUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 12PHE 580
A
 THR 12PHE 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9FUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
16 21Right-handed alpha
Helix 2
AA2
B
23 55Right-handed alpha
Helix 3
AA3
B
61 107Right-handed alpha
Helix 4
AA4
B
112 119Right-handed alpha
Helix 5
AA5
B
123 164Right-handed alpha
Helix 6
AA6
B
166 212Right-handed alpha
Helix 7
AA7
B
213 221Right-handed alpha
Helix 8
AA8
B
222 250Right-handed alpha
Helix 9
AA9
B
251 272Right-handed alpha
Helix 10
AB1
B
280 294Right-handed alpha
Helix 11
AB2
B
294 304Right-handed alpha
Helix 12
AB3
B
305 307Right-handed 310
Helix 13
AB4
B
310 323Right-handed alpha
Helix 14
AB5
B
381 391Right-handed alpha
Helix 15
AB6
B
411 418Right-handed alpha
Helix 16
AB7
B
432 438Right-handed alpha
Helix 17
AB8
B
446 457Right-handed alpha
Helix 18
AB9
B
459 464Right-handed alpha
Helix 19
AC1
B
468 472Right-handed 310
Helix 20
AC2
B
482 498Right-handed alpha
Helix 21
AC3
B
515 528Right-handed alpha
Helix 22
AC4
B
538 545Right-handed alpha
Helix 23
AC5
B
561 568Right-handed alpha
Helix 24
AC6
B
571 580Right-handed alpha
Helix 25
AC7
A
16 21Right-handed alpha
Helix 26
AC8
A
24 54Right-handed alpha
Helix 27
AC9
A
65 107Right-handed alpha
Helix 28
AD1
A
112 117Right-handed alpha
Helix 29
AD2
A
120 146Right-handed alpha
Helix 30
AD3
A
148 163Right-handed alpha
Helix 31
AD4
A
164 213Right-handed alpha
Helix 32
AD5
A
213 221Right-handed alpha
Helix 33
AD6
A
222 250Right-handed alpha
Helix 34
AD7
A
250 272Right-handed alpha
Helix 35
AD8
A
281 302Right-handed alpha
Helix 36
AD9
A
303 323Right-handed alpha
Helix 37
AE1
A
383 390Right-handed alpha
Helix 38
AE2
A
411 418Right-handed alpha
Helix 39
AE3
A
432 438Right-handed alpha
Helix 40
AE4
A
446 457Right-handed alpha
Helix 41
AE5
A
459 465Right-handed alpha
Helix 42
AE6
A
468 472Right-handed 310
Helix 43
AE7
A
482 498Right-handed alpha
Helix 44
AE8
A
515 529Right-handed alpha
Helix 45
AE9
A
538 544Right-handed alpha
Helix 46
AF1
A
561 568Right-handed alpha
Helix 47
AF2
A
571 579Right-handed alpha
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There are 5 sheets in PDB entry 9FUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
405 406anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 422first strand
Strand 2
B
501 504parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
548 551first strand
Strand 2
B
556 560anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 345first strand
Strand 2
A
399 402anti-parallel
Strand 3
A
405 406anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 422first strand
Strand 2
A
501 504parallel
Strand 3
A
531 536parallel
Strand 4
A
372 375parallel
Strand 5
A
548 550parallel
Strand 6
A
559 560anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il