Analysis of interatomic Contacts of Structural Units in PDB entry:
9FV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FV1 entry

There are 2 chains in PDB entry 9FV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12GLY 570
B
 THR 12GLY 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9FV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 30Right-handed alpha
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
47 54Right-handed alpha
Helix 4
AA4
A
66 108Right-handed alpha
Helix 5
AA5
A
112 117Right-handed alpha
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
129 138Right-handed alpha
Helix 8
AA8
A
140 149Right-handed alpha
Helix 9
AA9
A
149 164Right-handed alpha
Helix 10
AB1
A
164 213Right-handed alpha
Helix 11
AB2
A
213 218Right-handed alpha
Helix 12
AB3
A
222 270Right-handed alpha
Helix 13
AB4
A
271 276Right-handed 310
Helix 14
AB5
A
280 302Right-handed alpha
Helix 15
AB6
A
303 306Right-handed 310
Helix 16
AB7
A
307 322Right-handed alpha
Helix 17
AB8
A
383 391Right-handed alpha
Helix 18
AB9
A
411 418Right-handed alpha
Helix 19
AC1
A
432 438Right-handed alpha
Helix 20
AC2
A
446 457Right-handed alpha
Helix 21
AC3
A
459 465Right-handed alpha
Helix 22
AC4
A
482 498Right-handed alpha
Helix 23
AC5
A
514 529Right-handed alpha
Helix 24
AC6
A
538 545Right-handed alpha
Helix 25
AC7
A
561 566Right-handed alpha
Helix 26
AC8
B
16 21Right-handed alpha
Helix 27
AC9
B
24 47Right-handed alpha
Helix 28
AD1
B
47 54Right-handed alpha
Helix 29
AD2
B
61 89Right-handed alpha
Helix 30
AD3
B
91 96Right-handed alpha
Helix 31
AD4
B
97 109Right-handed alpha
Helix 32
AD5
B
112 117Right-handed alpha
Helix 33
AD6
B
129 137Right-handed alpha
Helix 34
AD7
B
139 164Right-handed alpha
Helix 35
AD8
B
164 213Right-handed alpha
Helix 36
AD9
B
215 220Right-handed alpha
Helix 37
AE1
B
223 270Right-handed alpha
Helix 38
AE2
B
280 302Right-handed alpha
Helix 39
AE3
B
303 309Right-handed alpha
Helix 40
AE4
B
311 323Right-handed alpha
Helix 41
AE5
B
384 389Right-handed alpha
Helix 42
AE6
B
411 419Right-handed alpha
Helix 43
AE7
B
432 438Right-handed alpha
Helix 44
AE8
B
446 457Right-handed alpha
Helix 45
AE9
B
459 466Right-handed alpha
Helix 46
AF1
B
468 472Right-handed 310
Helix 47
AF2
B
482 496Right-handed alpha
Helix 48
AF3
B
514 529Right-handed alpha
Helix 49
AF4
B
538 544Right-handed alpha
Helix 50
AF5
B
561 566Right-handed alpha
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There are 7 sheets in PDB entry 9FV1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 348first strand
Strand 2
A
397 402anti-parallel
Strand 3
A
405 406anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 374first strand
Strand 2
A
531 535parallel
Strand 3
A
501 504parallel
Strand 4
A
419 422parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
A
555 556anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
363 366first strand
Strand 2
B
342 345anti-parallel
Strand 3
B
400 402anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 350first strand
Strand 2
B
357 359anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
501 504parallel
Strand 3
B
531 535parallel
Strand 4
B
371 374parallel
Strand 5
B
547 548parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 552first strand
Strand 2
B
555 558anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il