Analysis of interatomic Contacts of Structural Units in PDB entry:
9FV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FV5 entry

There are 2 chains in PDB entry 9FV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 12GLN 574
B
 THR 12GLN 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9FV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
24 47Right-handed alpha
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
62 96Right-handed alpha
Helix 5
AA5
A
96 111Right-handed alpha
Helix 6
AA6
A
112 117Right-handed alpha
Helix 7
AA7
A
119 136Right-handed alpha
Helix 8
AA8
A
139 164Right-handed alpha
Helix 9
AA9
A
164 213Right-handed alpha
Helix 10
AB1
A
222 250Right-handed alpha
Helix 11
AB2
A
250 270Right-handed alpha
Helix 12
AB3
A
280 294Right-handed alpha
Helix 13
AB4
A
294 303Right-handed alpha
Helix 14
AB5
A
303 323Right-handed alpha
Helix 15
AB6
A
381 390Right-handed alpha
Helix 16
AB7
A
411 419Right-handed alpha
Helix 17
AB8
A
432 438Right-handed alpha
Helix 18
AB9
A
446 457Right-handed alpha
Helix 19
AC1
A
459 466Right-handed alpha
Helix 20
AC2
A
482 498Right-handed alpha
Helix 21
AC3
A
515 530Right-handed alpha
Helix 22
AC4
A
539 545Right-handed alpha
Helix 23
AC5
A
561 566Right-handed alpha
Helix 24
AC6
B
16 21Right-handed alpha
Helix 25
AC7
B
24 47Right-handed alpha
Helix 26
AC8
B
47 53Right-handed alpha
Helix 27
AC9
B
60 89Right-handed alpha
Helix 28
AD1
B
96 110Right-handed alpha
Helix 29
AD2
B
112 116Right-handed 310
Helix 30
AD3
B
120 136Right-handed alpha
Helix 31
AD4
B
140 164Right-handed alpha
Helix 32
AD5
B
164 213Right-handed alpha
Helix 33
AD6
B
213 221Right-handed alpha
Helix 34
AD7
B
223 270Right-handed alpha
Helix 35
AD8
B
280 299Right-handed alpha
Helix 36
AD9
B
303 323Right-handed alpha
Helix 37
AE1
B
381 391Right-handed alpha
Helix 38
AE2
B
408 410Right-handed 310
Helix 39
AE3
B
411 418Right-handed alpha
Helix 40
AE4
B
432 438Right-handed alpha
Helix 41
AE5
B
441 445Right-handed 310
Helix 42
AE6
B
446 457Right-handed alpha
Helix 43
AE7
B
459 466Right-handed alpha
Helix 44
AE8
B
468 472Right-handed 310
Helix 45
AE9
B
482 496Right-handed alpha
Helix 46
AF1
B
518 527Right-handed alpha
Helix 47
AF2
B
538 545Right-handed alpha
Helix 48
AF3
B
561 568Right-handed alpha
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There are 6 sheets in PDB entry 9FV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
342 349anti-parallel
Strand 3
A
397 402anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 534first strand
Strand 2
A
371 374parallel
Strand 3
A
547 549parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
503 504parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 365first strand
Strand 2
B
343 349anti-parallel
Strand 3
B
397 402anti-parallel
Strand 4
B
405 406anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
532 535first strand
Strand 2
B
371 374parallel
Strand 3
B
547 548parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 552first strand
Strand 2
B
555 556anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il