Analysis of interatomic Contacts of Structural Units in PDB entry:
9FVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FVA entry

There are 2 chains in PDB entry 9FVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 12PHE 580
A
 THR 12PHE 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9FVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
15 20Right-handed alpha
Helix 2
AA2
B
21 23Right-handed 310
Helix 3
AA3
B
24 53Right-handed alpha
Helix 4
AA4
B
62 65Right-handed 310
Helix 5
AA5
B
66 109Right-handed alpha
Helix 6
AA6
B
123 164Right-handed alpha
Helix 7
AA7
B
164 213Right-handed alpha
Helix 8
AA8
B
213 221Right-handed alpha
Helix 9
AA9
B
222 270Right-handed alpha
Helix 10
AB1
B
282 302Right-handed alpha
Helix 11
AB2
B
303 322Right-handed alpha
Helix 12
AB3
B
381 387Right-handed alpha
Helix 13
AB4
B
432 438Right-handed alpha
Helix 14
AB5
B
446 458Right-handed alpha
Helix 15
AB6
B
482 497Right-handed alpha
Helix 16
AB7
B
524 529Right-handed alpha
Helix 17
AB8
B
538 544Right-handed alpha
Helix 18
AB9
B
561 568Right-handed alpha
Helix 19
AC1
B
571 580Right-handed alpha
Helix 20
AC2
A
15 21Right-handed alpha
Helix 21
AC3
A
23 47Right-handed alpha
Helix 22
AC4
A
47 53Right-handed alpha
Helix 23
AC5
A
66 107Right-handed alpha
Helix 24
AC6
A
112 116Right-handed 310
Helix 25
AC7
A
123 129Right-handed alpha
Helix 26
AC8
A
129 148Right-handed alpha
Helix 27
AC9
A
151 158Right-handed alpha
Helix 28
AD1
A
158 163Right-handed alpha
Helix 29
AD2
A
168 195Right-handed alpha
Helix 30
AD3
A
196 213Right-handed alpha
Helix 31
AD4
A
213 221Right-handed alpha
Helix 32
AD5
A
222 270Right-handed alpha
Helix 33
AD6
A
272 277Right-handed alpha
Helix 34
AD7
A
281 303Right-handed alpha
Helix 35
AD8
A
303 309Right-handed alpha
Helix 36
AD9
A
310 324Right-handed alpha
Helix 37
AE1
A
381 391Right-handed alpha
Helix 38
AE2
A
411 419Right-handed alpha
Helix 39
AE3
A
433 437Right-handed alpha
Helix 40
AE4
A
446 456Right-handed alpha
Helix 41
AE5
A
482 486Right-handed 310
Helix 42
AE6
A
514 528Right-handed alpha
Helix 43
AE7
A
541 545Right-handed 310
Helix 44
AE8
A
563 568Right-handed alpha
Helix 45
AE9
A
571 580Right-handed alpha
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There are 6 sheets in PDB entry 9FVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 345first strand
Strand 2
B
363 366anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
395 397anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 504first strand
Strand 2
B
532 535parallel
Strand 3
B
372 375parallel
Strand 4
B
549 552parallel
Strand 5
B
555 558anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
342 345anti-parallel
Strand 3
A
399 402anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
548 549parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
473 474anti-parallel
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