Analysis of interatomic Contacts of Structural Units in PDB entry:
9FVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FVB entry

There are 4 chains in PDB entry 9FVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3MET 299
B
 MET -1MET 299
C
 GLN 1SER 121
H
 GLN 1SER 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9FVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 31Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
67 73Right-handed 310
Helix 4
AA4
A
74 82Right-handed 310
Helix 5
AA5
A
88 98Right-handed alpha
Helix 6
AA6
A
98 113Right-handed alpha
Helix 7
AA7
A
135 140Right-handed 310
Helix 8
AA8
A
149 159Right-handed alpha
Helix 9
AA9
A
167 169Right-handed 310
Helix 10
AB1
A
170 177Right-handed alpha
Helix 11
AB2
A
187 193Right-handed alpha
Helix 12
AB3
A
194 199Right-handed 310
Helix 13
AB4
A
218 224Right-handed alpha
Helix 14
AB5
A
225 261Right-handed alpha
Helix 15
AB6
A
270 277Right-handed alpha
Helix 16
AB7
A
277 288Right-handed alpha
Helix 17
AB8
A
292 299Right-handed alpha
Helix 18
AB9
B
14 31Right-handed alpha
Helix 19
AC1
B
47 57Right-handed alpha
Helix 20
AC2
B
67 73Right-handed 310
Helix 21
AC3
B
74 82Right-handed 310
Helix 22
AC4
B
88 98Right-handed alpha
Helix 23
AC5
B
98 113Right-handed alpha
Helix 24
AC6
B
135 140Right-handed 310
Helix 25
AC7
B
149 159Right-handed alpha
Helix 26
AC8
B
167 169Right-handed 310
Helix 27
AC9
B
170 177Right-handed alpha
Helix 28
AD1
B
187 193Right-handed alpha
Helix 29
AD2
B
194 198Right-handed 310
Helix 30
AD3
B
218 223Right-handed alpha
Helix 31
AD4
B
225 261Right-handed alpha
Helix 32
AD5
B
270 277Right-handed alpha
Helix 33
AD6
B
277 289Right-handed alpha
Helix 34
AD7
B
291 299Right-handed alpha
Helix 35
AD8
C
28 32Right-handed 310
Helix 36
AD9
C
62 65Right-handed 310
Helix 37
AE1
C
87 91Right-handed 310
Helix 38
AE2
H
28 32Right-handed 310
Helix 39
AE3
H
87 91Right-handed 310
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There are 12 sheets in PDB entry 9FVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
2 7parallel
Strand 3
A
62 65parallel
Strand 4
A
201 217anti-parallel
Strand 5
A
114 129anti-parallel
Strand 6
A
182 186anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
2 7parallel
Strand 3
A
62 65parallel
Strand 4
A
201 217anti-parallel
Strand 5
A
264 266parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
162 165parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
2 7parallel
Strand 3
B
62 65parallel
Strand 4
B
201 217anti-parallel
Strand 5
B
114 129anti-parallel
Strand 6
B
182 186anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 40first strand
Strand 2
B
2 7parallel
Strand 3
B
62 65parallel
Strand 4
B
201 217anti-parallel
Strand 5
B
264 266parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
162 165parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
115 119parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
58 60anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
115 119parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
110 111anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
115 120parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
115 120parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
110 111anti-parallel
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