Analysis of interatomic Contacts of Structural Units in PDB entry:
9FVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FVD entry

There are 8 chains in PDB entry 9FVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 1GLU 391
A
 GLY 1GLU 391
C
 GLY 1GLU 391
S
 A 1 A 18
R
 A 7 A 18
Q
 A 1 C 6
U
 A 1 A 12
T
 A 13 A 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 9FVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4 13Right-handed 310
Helix 2
AA2
B
31 45Right-handed alpha
Helix 3
AA3
B
51 67Right-handed alpha
Helix 4
AA4
B
70 75Right-handed alpha
Helix 5
AA5
B
76 86Right-handed alpha
Helix 6
AA6
B
99 104Right-handed alpha
Helix 7
AA7
B
110 118Right-handed alpha
Helix 8
AA8
B
129 139Right-handed alpha
Helix 9
AA9
B
148 165Right-handed alpha
Helix 10
AB1
B
171 175Right-handed 310
Helix 11
AB2
B
176 190Right-handed alpha
Helix 12
AB3
B
190 204Right-handed alpha
Helix 13
AB4
B
209 223Right-handed alpha
Helix 14
AB5
B
227 237Right-handed alpha
Helix 15
AB6
B
249 252Right-handed 310
Helix 16
AB7
B
253 272Right-handed alpha
Helix 17
AB8
B
276 278Right-handed 310
Helix 18
AB9
B
279 284Right-handed alpha
Helix 19
AC1
B
287 292Right-handed 310
Helix 20
AC2
B
296 311Right-handed alpha
Helix 21
AC3
B
312 317Right-handed 310
Helix 22
AC4
B
323 350Right-handed alpha
Helix 23
AC5
B
352 391Right-handed alpha
Helix 24
AC6
A
4 13Right-handed 310
Helix 25
AC7
A
31 45Right-handed alpha
Helix 26
AC8
A
51 67Right-handed alpha
Helix 27
AC9
A
70 75Right-handed alpha
Helix 28
AD1
A
76 86Right-handed alpha
Helix 29
AD2
A
99 104Right-handed alpha
Helix 30
AD3
A
110 118Right-handed alpha
Helix 31
AD4
A
129 139Right-handed alpha
Helix 32
AD5
A
148 165Right-handed alpha
Helix 33
AD6
A
171 175Right-handed 310
Helix 34
AD7
A
176 190Right-handed alpha
Helix 35
AD8
A
190 204Right-handed alpha
Helix 36
AD9
A
209 223Right-handed alpha
Helix 37
AE1
A
227 237Right-handed alpha
Helix 38
AE2
A
249 252Right-handed 310
Helix 39
AE3
A
253 272Right-handed alpha
Helix 40
AE4
A
276 278Right-handed 310
Helix 41
AE5
A
279 284Right-handed alpha
Helix 42
AE6
A
287 292Right-handed 310
Helix 43
AE7
A
296 311Right-handed alpha
Helix 44
AE8
A
312 317Right-handed 310
Helix 45
AE9
A
323 350Right-handed alpha
Helix 46
AF1
A
352 391Right-handed alpha
Helix 47
AF2
C
4 13Right-handed 310
Helix 48
AF3
C
31 45Right-handed alpha
Helix 49
AF4
C
51 67Right-handed alpha
Helix 50
AF5
C
70 75Right-handed alpha
Helix 51
AF6
C
76 86Right-handed alpha
Helix 52
AF7
C
99 104Right-handed alpha
Helix 53
AF8
C
110 118Right-handed alpha
Helix 54
AF9
C
129 139Right-handed alpha
Helix 55
AG1
C
148 165Right-handed alpha
Helix 56
AG2
C
171 175Right-handed 310
Helix 57
AG3
C
176 190Right-handed alpha
Helix 58
AG4
C
190 204Right-handed alpha
Helix 59
AG5
C
209 223Right-handed alpha
Helix 60
AG6
C
227 237Right-handed alpha
Helix 61
AG7
C
249 252Right-handed 310
Helix 62
AG8
C
253 272Right-handed alpha
Helix 63
AG9
C
276 278Right-handed 310
Helix 64
AH1
C
279 284Right-handed alpha
Helix 65
AH2
C
287 292Right-handed 310
Helix 66
AH3
C
296 311Right-handed alpha
Helix 67
AH4
C
312 317Right-handed 310
Helix 68
AH5
C
323 350Right-handed alpha
Helix 69
AH6
C
352 391Right-handed alpha
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There are 6 sheets in PDB entry 9FVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
87 92parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
244 247anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
87 92parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 247anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 27first strand
Strand 2
C
87 92parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
244 247anti-parallel
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