Analysis of interatomic Contacts of Structural Units in PDB entry:
9FVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FVT entry

There are 4 chains in PDB entry 9FVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 16	LYS 534
B	ASN 16	LYS 534
C	ASN 16	LYS 534
D	ASN 16	LYS 534

There are 90 helices in PDB entry 9FVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	50	Right-handed 310
Helix 2	AA2	A	56	65	Right-handed alpha
Helix 3	AA3	A	78	89	Right-handed alpha
Helix 4	AA4	A	91	95	Right-handed 310
Helix 5	AA5	A	97	104	Right-handed alpha
Helix 6	AA6	A	124	132	Right-handed alpha
Helix 7	AA7	A	146	156	Right-handed alpha
Helix 8	AA8	A	171	190	Right-handed alpha
Helix 9	AA9	A	191	193	Right-handed 310
Helix 10	AB1	A	204	209	Right-handed 310
Helix 11	AB2	A	217	231	Right-handed alpha
Helix 12	AB3	A	285	296	Right-handed alpha
Helix 13	AB4	A	299	302	Right-handed 310
Helix 14	AB5	A	303	322	Right-handed alpha
Helix 15	AB6	A	324	326	Right-handed 310
Helix 16	AB7	A	338	342	Right-handed 310
Helix 17	AB8	A	347	352	Right-handed alpha
Helix 18	AB9	A	377	386	Right-handed alpha
Helix 19	AC1	A	400	405	Right-handed alpha
Helix 20	AC2	A	439	449	Right-handed alpha
Helix 21	AC3	A	454	458	Right-handed 310
Helix 22	AC4	A	468	478	Right-handed alpha
Helix 23	AC5	A	505	521	Right-handed alpha
Helix 24	AC6	B	46	50	Right-handed 310
Helix 25	AC7	B	56	65	Right-handed alpha
Helix 26	AC8	B	78	89	Right-handed alpha
Helix 27	AC9	B	91	95	Right-handed 310
Helix 28	AD1	B	97	104	Right-handed alpha
Helix 29	AD2	B	124	132	Right-handed alpha
Helix 30	AD3	B	146	156	Right-handed alpha
Helix 31	AD4	B	171	191	Right-handed alpha
Helix 32	AD5	B	204	209	Right-handed 310
Helix 33	AD6	B	217	232	Right-handed alpha
Helix 34	AD7	B	285	296	Right-handed alpha
Helix 35	AD8	B	299	302	Right-handed 310
Helix 36	AD9	B	303	322	Right-handed alpha
Helix 37	AE1	B	324	326	Right-handed 310
Helix 38	AE2	B	338	342	Right-handed 310
Helix 39	AE3	B	347	352	Right-handed alpha
Helix 40	AE4	B	377	386	Right-handed alpha
Helix 41	AE5	B	400	405	Right-handed alpha
Helix 42	AE6	B	439	449	Right-handed alpha
Helix 43	AE7	B	454	458	Right-handed 310
Helix 44	AE8	B	468	478	Right-handed alpha
Helix 45	AE9	B	505	521	Right-handed alpha
Helix 46	AF1	C	46	50	Right-handed 310
Helix 47	AF2	C	56	65	Right-handed alpha
Helix 48	AF3	C	78	89	Right-handed alpha
Helix 49	AF4	C	91	95	Right-handed 310
Helix 50	AF5	C	97	104	Right-handed alpha
Helix 51	AF6	C	124	132	Right-handed alpha
Helix 52	AF7	C	146	156	Right-handed alpha
Helix 53	AF8	C	171	191	Right-handed alpha
Helix 54	AF9	C	204	209	Right-handed 310
Helix 55	AG1	C	210	214	Right-handed 310
Helix 56	AG2	C	217	232	Right-handed alpha
Helix 57	AG3	C	285	296	Right-handed alpha
Helix 58	AG4	C	299	302	Right-handed 310
Helix 59	AG5	C	303	322	Right-handed alpha
Helix 60	AG6	C	324	326	Right-handed 310
Helix 61	AG7	C	338	342	Right-handed 310
Helix 62	AG8	C	347	352	Right-handed alpha
Helix 63	AG9	C	377	386	Right-handed alpha
Helix 64	AH1	C	400	405	Right-handed alpha
Helix 65	AH2	C	439	449	Right-handed alpha
Helix 66	AH3	C	454	458	Right-handed 310
Helix 67	AH4	C	468	478	Right-handed alpha
Helix 68	AH5	C	505	521	Right-handed alpha
Helix 69	AH6	D	46	50	Right-handed 310
Helix 70	AH7	D	56	65	Right-handed alpha
Helix 71	AH8	D	78	89	Right-handed alpha
Helix 72	AH9	D	91	95	Right-handed 310
Helix 73	AI1	D	97	104	Right-handed alpha
Helix 74	AI2	D	124	132	Right-handed alpha
Helix 75	AI3	D	146	156	Right-handed alpha
Helix 76	AI4	D	171	190	Right-handed alpha
Helix 77	AI5	D	191	193	Right-handed 310
Helix 78	AI6	D	204	209	Right-handed 310
Helix 79	AI7	D	217	231	Right-handed alpha
Helix 80	AI8	D	285	296	Right-handed alpha
Helix 81	AI9	D	299	302	Right-handed 310
Helix 82	AJ1	D	303	322	Right-handed alpha
Helix 83	AJ2	D	338	342	Right-handed 310
Helix 84	AJ3	D	347	352	Right-handed alpha
Helix 85	AJ4	D	377	386	Right-handed alpha
Helix 86	AJ5	D	400	405	Right-handed alpha
Helix 87	AJ6	D	439	449	Right-handed alpha
Helix 88	AJ7	D	454	458	Right-handed 310
Helix 89	AJ8	D	468	478	Right-handed alpha
Helix 90	AJ9	D	505	521	Right-handed alpha

There are 16 sheets in PDB entry 9FVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	201	first strand
Strand 2	A	135	141	parallel
Strand 3	A	238	243	parallel
Strand 4	A	20	26	parallel
Strand 5	A	328	334	parallel
Strand 6	A	355	358	anti-parallel
Strand 7	A	67	69	anti-parallel
Strand 8	A	367	369	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	373	374	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	274	275	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	420	first strand
Strand 2	A	423	427	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	486	490	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	201	first strand
Strand 2	B	135	141	parallel
Strand 3	B	238	243	parallel
Strand 4	B	20	26	parallel
Strand 5	B	328	334	parallel
Strand 6	B	355	358	anti-parallel
Strand 7	B	67	69	anti-parallel
Strand 8	B	367	369	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	373	374	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	274	275	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	420	first strand
Strand 2	B	423	427	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	486	490	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	201	first strand
Strand 2	C	135	141	parallel
Strand 3	C	238	243	parallel
Strand 4	C	20	26	parallel
Strand 5	C	328	334	parallel
Strand 6	C	355	358	anti-parallel
Strand 7	C	67	69	anti-parallel
Strand 8	C	367	369	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	C	373	374	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	271	first strand
Strand 2	C	274	275	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	420	first strand
Strand 2	C	423	427	anti-parallel
Strand 3	C	431	436	anti-parallel
Strand 4	C	486	490	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	201	first strand
Strand 2	D	135	141	parallel
Strand 3	D	238	243	parallel
Strand 4	D	20	26	parallel
Strand 5	D	328	334	parallel
Strand 6	D	355	358	anti-parallel
Strand 7	D	67	69	anti-parallel
Strand 8	D	367	369	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	D	373	374	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	271	first strand
Strand 2	D	274	275	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	420	first strand
Strand 2	D	423	427	anti-parallel
Strand 3	D	431	436	anti-parallel
Strand 4	D	486	490	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FVT