Analysis of interatomic Contacts of Structural Units in PDB entry:
9FW1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FW1 entry

There are 2 chains in PDB entry 9FW1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ALA 439
B
 SER 2HIS 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 9FW1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
19 35Right-handed alpha
Helix 3
AA3
A
45 62Right-handed alpha
Helix 4
AA4
A
90 94Right-handed 310
Helix 5
AA5
A
102 111Right-handed alpha
Helix 6
AA6
A
122 126Right-handed 310
Helix 7
AA7
A
152 161Right-handed alpha
Helix 8
AA8
A
176 184Right-handed alpha
Helix 9
AA9
A
221 233Right-handed alpha
Helix 10
AB1
A
262 279Right-handed alpha
Helix 11
AB2
A
292 310Right-handed alpha
Helix 12
AB3
A
321 343Right-handed alpha
Helix 13
AB4
A
366 369Right-handed 310
Helix 14
AB5
A
384 395Right-handed alpha
Helix 15
AB6
A
422 439Right-handed alpha
Helix 16
AB7
B
5 15Right-handed alpha
Helix 17
AB8
B
19 35Right-handed alpha
Helix 18
AB9
B
45 62Right-handed alpha
Helix 19
AC1
B
90 94Right-handed 310
Helix 20
AC2
B
102 111Right-handed alpha
Helix 21
AC3
B
122 126Right-handed 310
Helix 22
AC4
B
152 161Right-handed alpha
Helix 23
AC5
B
176 184Right-handed alpha
Helix 24
AC6
B
221 233Right-handed alpha
Helix 25
AC7
B
262 278Right-handed alpha
Helix 26
AC8
B
292 309Right-handed alpha
Helix 27
AC9
B
321 343Right-handed alpha
Helix 28
AD1
B
366 369Right-handed 310
Helix 29
AD2
B
382 384Right-handed 310
Helix 30
AD3
B
385 395Right-handed alpha
Helix 31
AD4
B
422 439Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9FW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
114 119anti-parallel
Strand 3
A
72 76parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
186 189anti-parallel
Strand 4
A
398 405anti-parallel
Strand 5
A
411 417anti-parallel
Strand 6
A
348 352anti-parallel
Strand 7
A
249 252parallel
Strand 8
A
282 284parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 374first strand
Strand 2
A
377 380anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
114 119anti-parallel
Strand 3
B
72 76parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
136 137anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
143 147anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 171first strand
Strand 2
B
214 219anti-parallel
Strand 3
B
186 189anti-parallel
Strand 4
B
398 405anti-parallel
Strand 5
B
411 417anti-parallel
Strand 6
B
348 352anti-parallel
Strand 7
B
249 252parallel
Strand 8
B
282 284parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 374first strand
Strand 2
B
377 380anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il