Analysis of interatomic Contacts of Structural Units in PDB entry:
9FW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FW9 entry

There are 4 chains in PDB entry 9FW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PRO 116	ARG 833
C	GLY 1	GLU 205
B	ALA 20	GLN 159
A	VAL 5	GLN 159

There are 9 helices in PDB entry 9FW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	129	133	Right-handed 310
Helix 2	AA2	D	246	250	Right-handed 310
Helix 3	AA3	D	443	448	Right-handed alpha
Helix 4	AA4	D	558	560	Right-handed 310
Helix 5	AA5	D	567	570	Right-handed 310
Helix 6	AA6	D	817	823	Right-handed alpha
Helix 7	AA7	C	124	128	Right-handed 310
Helix 8	AA8	A	27	29	Right-handed 310
Helix 9	AA9	A	62	68	Right-handed alpha

There are 18 sheets in PDB entry 9FW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 26 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	666	first strand
Strand 2	D	645	659	anti-parallel
Strand 3	D	634	641	anti-parallel
Strand 4	D	622	629	anti-parallel
Strand 5	D	603	612	anti-parallel
Strand 6	D	586	595	anti-parallel
Strand 7	D	572	580	anti-parallel
Strand 8	D	547	556	anti-parallel
Strand 9	D	528	538	anti-parallel
Strand 10	D	515	525	anti-parallel
Strand 11	D	496	507	anti-parallel
Strand 12	D	480	492	anti-parallel
Strand 13	D	428	437	anti-parallel
Strand 14	D	408	420	anti-parallel
Strand 15	D	390	402	anti-parallel
Strand 16	D	375	385	anti-parallel
Strand 17	D	363	372	anti-parallel
Strand 18	D	349	359	anti-parallel
Strand 19	D	329	338	anti-parallel
Strand 20	D	231	240	anti-parallel
Strand 21	D	214	223	anti-parallel
Strand 22	D	199	209	anti-parallel
Strand 23	D	175	186	anti-parallel
Strand 24	D	157	172	anti-parallel
Strand 25	D	139	153	anti-parallel
Strand 26	D	645	659	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	259	first strand
Strand 2	D	284	287	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	280	first strand
Strand 2	D	264	269	anti-parallel
Strand 3	D	296	305	anti-parallel
Strand 4	D	311	318	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	699	702	first strand
Strand 2	D	673	677	anti-parallel
Strand 3	D	740	744	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	714	first strand
Strand 2	D	730	733	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	725	726	first strand
Strand 2	D	747	748	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	763	first strand
Strand 2	D	751	759	anti-parallel
Strand 3	D	786	792	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	763	first strand
Strand 2	D	751	759	anti-parallel
Strand 3	D	825	832	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	777	780	first strand
Strand 2	D	769	772	anti-parallel
Strand 3	D	796	801	anti-parallel
Strand 4	D	810	814	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	62	69	anti-parallel
Strand 4	C	48	51	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	102	116	parallel
Strand 3	A	31	33	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	30	38	anti-parallel
Strand 3	C	81	90	anti-parallel
Strand 4	C	102	116	anti-parallel
Strand 5	A	151	157	parallel
Strand 6	A	70	74	anti-parallel
Strand 7	A	118	119	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	139	144	anti-parallel
Strand 3	C	171	173	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	150	156	anti-parallel
Strand 3	C	186	189	anti-parallel
Strand 4	C	200	201	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	52	61	anti-parallel
Strand 3	B	127	139	anti-parallel
Strand 4	B	99	103	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	38	first strand
Strand 2	A	9	17	parallel
Strand 3	B	146	159	anti-parallel
Strand 4	B	68	74	anti-parallel
Strand 5	B	122	123	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	52	59	anti-parallel
Strand 3	A	129	137	anti-parallel
Strand 4	A	100	104	anti-parallel
Strand 5	A	85	87	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	52	59	anti-parallel
Strand 3	A	129	137	anti-parallel
Strand 4	A	123	124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FW9