Analysis of interatomic Contacts of Structural Units in PDB entry:
9FY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FY8 entry

There are 6 chains in PDB entry 9FY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1	PRO 212
C	ASP 1	GLU 214
D	VAL 2	VAL 118
I	GLU 1	PRO 213
L	ASP 1	GLU 214
V	VAL 2	SER 119

There are 15 helices in PDB entry 9FY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	86	90	Right-handed 310
Helix 2	AA2	B	155	157	Right-handed 310
Helix 3	AA3	B	186	188	Right-handed 310
Helix 4	AA4	C	78	82	Right-handed 310
Helix 5	AA5	C	122	127	Right-handed alpha
Helix 6	AA6	C	184	188	Right-handed alpha
Helix 7	AA7	D	86	90	Right-handed 310
Helix 8	AA8	I	64	66	Right-handed 310
Helix 9	AA9	I	87	91	Right-handed 310
Helix 10	AB1	I	156	158	Right-handed 310
Helix 11	AB2	I	187	189	Right-handed 310
Helix 12	AB3	L	78	82	Right-handed 310
Helix 13	AB4	L	122	127	Right-handed alpha
Helix 14	AB5	L	184	189	Right-handed alpha
Helix 15	AB6	V	86	90	Right-handed 310

There are 29 sheets in PDB entry 9FY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	68	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	71	72	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	106	110	parallel
Strand 3	B	91	97	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	106	110	parallel
Strand 3	B	91	97	anti-parallel
Strand 4	B	101	102	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	175	184	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	175	184	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	194	199	anti-parallel
Strand 3	B	204	209	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	29	anti-parallel
Strand 3	C	61	74	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	103	107	parallel
Strand 3	C	83	91	anti-parallel
Strand 4	C	32	37	anti-parallel
Strand 5	C	44	48	anti-parallel
Strand 6	C	52	53	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	103	107	parallel
Strand 3	C	83	91	anti-parallel
Strand 4	C	96	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	130	140	anti-parallel
Strand 3	C	174	183	anti-parallel
Strand 4	C	160	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	145	151	anti-parallel
Strand 3	C	192	199	anti-parallel
Strand 4	C	206	211	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	114	117	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	32	38	anti-parallel
Strand 5	D	45	50	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	114	117	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	107	110	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	72	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	92	97	anti-parallel
Strand 4	I	35	40	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	135	145	anti-parallel
Strand 3	I	176	185	anti-parallel
Strand 4	I	163	165	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	124	first strand
Strand 2	I	135	145	anti-parallel
Strand 3	I	176	185	anti-parallel
Strand 4	I	169	170	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	154	first strand
Strand 2	I	194	200	anti-parallel
Strand 3	I	205	211	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	61	74	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	48	anti-parallel
Strand 6	L	52	53	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	84	91	anti-parallel
Strand 4	L	96	99	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	151	first strand
Strand 2	L	192	199	anti-parallel
Strand 3	L	206	211	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	4	7	first strand
Strand 2	V	18	24	anti-parallel
Strand 3	V	77	82	anti-parallel
Strand 4	V	67	72	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	12	first strand
Strand 2	V	114	118	parallel
Strand 3	V	91	98	anti-parallel
Strand 4	V	32	38	anti-parallel
Strand 5	V	45	50	anti-parallel
Strand 6	V	57	59	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	12	first strand
Strand 2	V	114	118	parallel
Strand 3	V	91	98	anti-parallel
Strand 4	V	107	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FY8