Analysis of interatomic Contacts of Structural Units in PDB entry:
9FY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FY9 entry

There are 5 chains in PDB entry 9FY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 1	GLU 205
D	LEU 113	ARG 833
F	ALA 1	GLN 154
G	ALA 1	SER 144
H	PHE 1	GLN 279

There are 11 helices in PDB entry 9FY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	124	131	Right-handed 310
Helix 2	AA2	D	116	120	Right-handed 310
Helix 3	AA3	D	129	133	Right-handed 310
Helix 4	AA4	D	293	296	Right-handed 310
Helix 5	AA5	D	443	447	Right-handed 310
Helix 6	AA6	D	557	561	Right-handed alpha
Helix 7	AA7	D	567	570	Right-handed 310
Helix 8	AA8	D	716	720	Right-handed 310
Helix 9	AA9	D	782	784	Right-handed 310
Helix 10	AB1	H	39	41	Right-handed 310
Helix 11	AB2	H	66	71	Right-handed 310

There are 26 sheets in PDB entry 9FY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	61	69	anti-parallel
Strand 4	C	48	51	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	102	116	parallel
Strand 3	F	23	24	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	30	38	anti-parallel
Strand 3	C	81	91	anti-parallel
Strand 4	C	102	116	anti-parallel
Strand 5	F	145	153	parallel
Strand 6	F	62	68	anti-parallel
Strand 7	F	114	116	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	139	144	anti-parallel
Strand 3	C	171	175	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	167	first strand
Strand 2	C	150	157	anti-parallel
Strand 3	C	185	189	anti-parallel
Strand 4	C	200	201	anti-parallel

Back to list of sheets
Back to top of page

There are 26 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	662	666	first strand
Strand 2	D	646	659	anti-parallel
Strand 3	D	634	641	anti-parallel
Strand 4	D	619	629	anti-parallel
Strand 5	D	603	612	anti-parallel
Strand 6	D	586	595	anti-parallel
Strand 7	D	572	580	anti-parallel
Strand 8	D	546	556	anti-parallel
Strand 9	D	529	538	anti-parallel
Strand 10	D	513	523	anti-parallel
Strand 11	D	496	507	anti-parallel
Strand 12	D	480	491	anti-parallel
Strand 13	D	428	437	anti-parallel
Strand 14	D	408	420	anti-parallel
Strand 15	D	391	402	anti-parallel
Strand 16	D	375	385	anti-parallel
Strand 17	D	363	372	anti-parallel
Strand 18	D	349	359	anti-parallel
Strand 19	D	329	337	anti-parallel
Strand 20	D	232	240	anti-parallel
Strand 21	D	214	222	anti-parallel
Strand 22	D	198	209	anti-parallel
Strand 23	D	175	186	anti-parallel
Strand 24	D	157	172	anti-parallel
Strand 25	D	139	153	anti-parallel
Strand 26	D	646	659	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	260	first strand
Strand 2	D	283	287	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	280	first strand
Strand 2	D	264	270	anti-parallel
Strand 3	D	298	304	anti-parallel
Strand 4	D	310	316	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	699	702	first strand
Strand 2	D	673	677	anti-parallel
Strand 3	D	740	742	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	711	714	first strand
Strand 2	D	730	733	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	724	726	first strand
Strand 2	D	747	749	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	786	792	first strand
Strand 2	D	751	756	anti-parallel
Strand 3	D	825	829	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	758	759	first strand
Strand 2	D	762	763	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	778	780	first strand
Strand 2	D	769	772	anti-parallel
Strand 3	D	795	801	anti-parallel
Strand 4	D	810	815	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	31	first strand
Strand 2	F	3	12	parallel
Strand 3	G	131	143	anti-parallel
Strand 4	G	60	66	anti-parallel
Strand 5	G	101	105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	F	47	56	anti-parallel
Strand 3	F	123	133	anti-parallel
Strand 4	F	42	43	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	20	first strand
Strand 2	F	47	56	anti-parallel
Strand 3	F	123	133	anti-parallel
Strand 4	F	91	96	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	171	first strand
Strand 2	G	3	11	parallel
Strand 3	H	266	278	anti-parallel
Strand 4	H	191	196	anti-parallel
Strand 5	H	238	243	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	18	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	113	122	anti-parallel
Strand 4	G	85	90	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	43	45	anti-parallel
Strand 3	H	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	22	first strand
Strand 2	H	142	150	parallel
Strand 3	H	125	135	anti-parallel
Strand 4	H	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	22	first strand
Strand 2	H	142	150	parallel
Strand 3	H	125	135	anti-parallel
Strand 4	H	54	58	anti-parallel
Strand 5	H	93	95	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	37	first strand
Strand 2	H	105	109	anti-parallel
Strand 3	H	73	77	anti-parallel
Strand 4	H	80	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	117	120	first strand
Strand 2	H	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	163	first strand
Strand 2	H	184	187	anti-parallel
Strand 3	H	248	249	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	178	180	first strand
Strand 2	H	253	258	anti-parallel
Strand 3	H	221	227	anti-parallel
Strand 4	H	230	231	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FY9