Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FYB entry

There are 2 chains in PDB entry 9FYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 20TYR 212
B
 GLU 22TYR 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9FYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 52Right-handed alpha
Helix 2
AA2
A
75 88Right-handed alpha
Helix 3
AA3
A
97 103Right-handed alpha
Helix 4
AA4
A
107 119Right-handed alpha
Helix 5
AA5
A
130 134Right-handed alpha
Helix 6
AA6
A
135 139Right-handed 310
Helix 7
AA7
A
141 146Right-handed alpha
Helix 8
AA8
A
178 188Right-handed alpha
Helix 9
AA9
A
197 208Right-handed alpha
Helix 10
AB1
B
38 53Right-handed alpha
Helix 11
AB2
B
75 88Right-handed alpha
Helix 12
AB3
B
97 103Right-handed alpha
Helix 13
AB4
B
107 119Right-handed alpha
Helix 14
AB5
B
132 139Right-handed 310
Helix 15
AB6
B
141 149Right-handed alpha
Helix 16
AB7
B
178 189Right-handed alpha
Helix 17
AB8
B
197 207Right-handed alpha
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There are 2 sheets in PDB entry 9FYB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
56 61parallel
Strand 3
A
25 32parallel
Strand 4
A
122 129parallel
Strand 5
A
150 155parallel
Strand 6
A
168 171parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
56 61parallel
Strand 3
B
25 32parallel
Strand 4
B
122 129parallel
Strand 5
B
150 154parallel
Strand 6
B
167 170parallel
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