Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FYC entry

There are 2 chains in PDB entry 9FYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ARG 956
B
 GLY 25GLU 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 9FYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
10 22Right-handed alpha
Helix 3
AA3
A
26 51Right-handed alpha
Helix 4
AA4
A
58 68Right-handed alpha
Helix 5
AA5
A
68 85Right-handed alpha
Helix 6
AA6
A
85 91Right-handed alpha
Helix 7
AA7
A
93 118Right-handed alpha
Helix 8
AA8
A
155 172Right-handed alpha
Helix 9
AA9
A
175 182Right-handed alpha
Helix 10
AB1
A
189 192Right-handed 310
Helix 11
AB2
A
206 218Right-handed alpha
Helix 12
AB3
A
236 246Right-handed alpha
Helix 13
AB4
A
261 271Right-handed alpha
Helix 14
AB5
A
286 295Right-handed alpha
Helix 15
AB6
A
311 319Right-handed alpha
Helix 16
AB7
A
338 346Right-handed alpha
Helix 17
AB8
A
354 364Right-handed alpha
Helix 18
AB9
A
365 367Right-handed 310
Helix 19
AC1
A
370 380Right-handed alpha
Helix 20
AC2
A
391 395Right-handed 310
Helix 21
AC3
A
412 423Right-handed alpha
Helix 22
AC4
A
424 426Right-handed 310
Helix 23
AC5
A
427 434Right-handed alpha
Helix 24
AC6
A
435 438Right-handed 310
Helix 25
AC7
A
446 457Right-handed alpha
Helix 26
AC8
A
467 482Right-handed alpha
Helix 27
AC9
A
501 515Right-handed alpha
Helix 28
AD1
A
625 631Right-handed 310
Helix 29
AD2
A
692 697Right-handed alpha
Helix 30
AD3
A
715 727Right-handed alpha
Helix 31
AD4
A
747 757Right-handed alpha
Helix 32
AD5
A
773 782Right-handed alpha
Helix 33
AD6
A
803 812Right-handed alpha
Helix 34
AD7
A
909 924Right-handed alpha
Helix 35
AD8
B
36 46Right-handed alpha
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There are 7 sheets in PDB entry 9FYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
277 282parallel
Strand 3
A
303 309parallel
Strand 4
A
194 200parallel
Strand 5
A
326 327parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
497 499anti-parallel
Strand 3
A
486 488anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 521first strand
Strand 2
A
536 539parallel
Strand 3
A
562 565parallel
Strand 4
A
584 586parallel
Strand 5
A
613 615parallel
Strand 6
A
636 638parallel
Strand 7
A
660 662parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
683 685first strand
Strand 2
A
706 711parallel
Strand 3
A
734 739parallel
Strand 4
A
765 768parallel
Strand 5
A
793 796parallel
Strand 6
A
818 821parallel
Strand 7
A
843 846parallel
Strand 8
A
866 869parallel
Strand 9
A
899 903parallel
Strand 10
A
933 937parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
830 833first strand
Strand 2
A
853 856parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
33 35anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
93 97anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
114 118anti-parallel
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