Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FYL entry

There are 2 chains in PDB entry 9FYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 38HIS 362
B
 LYS 38LEU 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9FYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 67Right-handed alpha
Helix 2
AA2
A
84 88Right-handed 310
Helix 3
AA3
A
94 108Right-handed alpha
Helix 4
AA4
A
129 135Right-handed alpha
Helix 5
AA5
A
136 139Right-handed 310
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
160 178Right-handed alpha
Helix 8
AA8
A
205 222Right-handed alpha
Helix 9
AA9
A
234 237Right-handed 310
Helix 10
AB1
A
257 263Right-handed 310
Helix 11
AB2
A
282 290Right-handed alpha
Helix 12
AB3
A
302 313Right-handed alpha
Helix 13
AB4
A
314 316Right-handed 310
Helix 14
AB5
A
336 339Right-handed 310
Helix 15
AB6
A
340 347Right-handed alpha
Helix 16
AB7
A
347 352Right-handed alpha
Helix 17
AB8
A
353 355Right-handed 310
Helix 18
AB9
B
49 67Right-handed alpha
Helix 19
AC1
B
84 88Right-handed 310
Helix 20
AC2
B
94 108Right-handed alpha
Helix 21
AC3
B
129 135Right-handed alpha
Helix 22
AC4
B
136 139Right-handed 310
Helix 23
AC5
B
145 149Right-handed 310
Helix 24
AC6
B
160 178Right-handed alpha
Helix 25
AC7
B
205 222Right-handed alpha
Helix 26
AC8
B
234 237Right-handed 310
Helix 27
AC9
B
257 264Right-handed 310
Helix 28
AD1
B
282 290Right-handed alpha
Helix 29
AD2
B
301 314Right-handed alpha
Helix 30
AD3
B
336 339Right-handed 310
Helix 31
AD4
B
340 352Right-handed alpha
Helix 32
AD5
B
353 355Right-handed 310
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There are 6 sheets in PDB entry 9FYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
70 74parallel
Strand 3
A
40 46parallel
Strand 4
A
323 327parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
127 128anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
228 232parallel
Strand 3
A
269 273parallel
Strand 4
A
293 297parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 115first strand
Strand 2
B
70 74parallel
Strand 3
B
40 46parallel
Strand 4
B
323 327parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
127 128anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
228 232parallel
Strand 3
B
269 273parallel
Strand 4
B
294 297parallel
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