Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FYM entry

There is 1 chain in PDB entry 9FYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 33ASN 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 9FYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 67Right-handed alpha
Helix 2
AA2
A
84 88Right-handed 310
Helix 3
AA3
A
94 109Right-handed alpha
Helix 4
AA4
A
129 135Right-handed alpha
Helix 5
AA5
A
136 139Right-handed 310
Helix 6
AA6
A
145 149Right-handed 310
Helix 7
AA7
A
160 179Right-handed alpha
Helix 8
AA8
A
205 222Right-handed alpha
Helix 9
AA9
A
234 237Right-handed 310
Helix 10
AB1
A
257 263Right-handed 310
Helix 11
AB2
A
282 290Right-handed alpha
Helix 12
AB3
A
301 314Right-handed alpha
Helix 13
AB4
A
336 339Right-handed 310
Helix 14
AB5
A
340 345Right-handed alpha
Helix 15
AB6
A
347 352Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9FYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
70 74parallel
Strand 3
A
40 46parallel
Strand 4
A
323 327parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
127 128anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
228 232parallel
Strand 3
A
269 273parallel
Strand 4
A
293 297parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il