Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9FYN entry

There is 1 chain in PDB entry 9FYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 285LYS 934
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9FYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
319 321Right-handed 310
Helix 2
AA2
A
322 338Right-handed alpha
Helix 3
AA3
A
359 364Right-handed alpha
Helix 4
AA4
A
383 401Right-handed alpha
Helix 5
AA5
A
430 444Right-handed alpha
Helix 6
AA6
A
460 464Right-handed 310
Helix 7
AA7
A
470 485Right-handed alpha
Helix 8
AA8
A
498 503Right-handed alpha
Helix 9
AA9
A
505 509Right-handed 310
Helix 10
AB1
A
526 542Right-handed alpha
Helix 11
AB2
A
561 564Right-handed 310
Helix 12
AB3
A
565 577Right-handed alpha
Helix 13
AB4
A
582 600Right-handed alpha
Helix 14
AB5
A
610 612Right-handed 310
Helix 15
AB6
A
635 642Right-handed alpha
Helix 16
AB7
A
650 652Right-handed 310
Helix 17
AB8
A
661 667Right-handed alpha
Helix 18
AB9
A
668 673Right-handed alpha
Helix 19
AC1
A
685 687Right-handed 310
Helix 20
AC2
A
694 696Right-handed 310
Helix 21
AC3
A
714 722Right-handed alpha
Helix 22
AC4
A
722 736Right-handed alpha
Helix 23
AC5
A
744 752Right-handed alpha
Helix 24
AC6
A
860 865Right-handed alpha
Helix 25
AC7
A
899 902Right-handed 310
Helix 26
AC8
A
923 927Right-handed 310
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There are 11 sheets in PDB entry 9FYN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 309first strand
Strand 2
A
403 411anti-parallel
Strand 3
A
368 373anti-parallel
Strand 4
A
376 381anti-parallel
Strand 5
A
350 355parallel
Strand 6
A
315 317parallel
Strand 7
A
344 345parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 656first strand
Strand 2
A
698 706parallel
Strand 3
A
646 648parallel
Strand 4
A
625 628parallel
Strand 5
A
604 608parallel
Strand 6
A
548 552parallel
Strand 7
A
487 494parallel
Strand 8
A
448 453parallel
Strand 9
A
417 424parallel
Strand 10
A
698 706parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 683first strand
Strand 2
A
689 691anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 778first strand
Strand 2
A
799 803anti-parallel
Strand 3
A
809 813anti-parallel
Strand 4
A
868 873anti-parallel
Strand 5
A
878 883anti-parallel
Strand 6
A
931 935anti-parallel
Strand 7
A
773 778anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
785 787first strand
Strand 2
A
791 793anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 821first strand
Strand 2
A
840 842anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
827 828first strand
Strand 2
A
831 832anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
889 892first strand
Strand 2
A
919 922anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 905first strand
Strand 2
A
908 909anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
940 947first strand
Strand 2
A
961 969anti-parallel
Strand 3
A
1005 1014anti-parallel
Strand 4
A
988 990anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
950 952first strand
Strand 2
A
1032 1043parallel
Strand 3
A
1019 1029anti-parallel
Strand 4
A
975 981anti-parallel
Strand 5
A
995 1000anti-parallel
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