Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FYR entry

There are 3 chains in PDB entry 9FYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 145	GLN 742
C	LEU 925	ASP 1315
D	GLN 4	THR 124

There are 26 helices in PDB entry 9FYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	145	160	Right-handed alpha
Helix 2	AA2	A	162	183	Right-handed alpha
Helix 3	AA3	A	184	197	Right-handed alpha
Helix 4	AA4	A	200	230	Right-handed alpha
Helix 5	AA5	A	231	249	Right-handed alpha
Helix 6	AA6	A	254	271	Right-handed alpha
Helix 7	AA7	A	272	282	Right-handed alpha
Helix 8	AA8	A	289	296	Right-handed alpha
Helix 9	AA9	A	297	315	Right-handed alpha
Helix 10	AB1	A	331	341	Right-handed alpha
Helix 11	AB2	A	341	352	Right-handed alpha
Helix 12	AB3	A	357	364	Right-handed alpha
Helix 13	AB4	A	366	383	Right-handed alpha
Helix 14	AB5	A	422	438	Right-handed alpha
Helix 15	AB6	A	443	483	Right-handed alpha
Helix 16	AB7	A	562	564	Right-handed 310
Helix 17	AB8	A	596	608	Right-handed alpha
Helix 18	AB9	A	608	623	Right-handed alpha
Helix 19	AC1	A	623	639	Right-handed alpha
Helix 20	AC2	A	640	643	Right-handed 310
Helix 21	AC3	A	647	677	Right-handed alpha
Helix 22	AC4	A	681	706	Right-handed alpha
Helix 23	AC5	A	712	732	Right-handed alpha
Helix 24	AC6	C	962	969	Right-handed alpha
Helix 25	AC7	C	1097	1109	Right-handed alpha
Helix 26	AC8	C	1288	1293	Right-handed 310

There are 10 sheets in PDB entry 9FYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	488	first strand
Strand 2	A	501	507	parallel
Strand 3	A	520	527	parallel
Strand 4	A	535	542	parallel
Strand 5	A	545	547	first strand
Strand 6	A	566	567	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	515	517	parallel
Strand 3	A	535	542	parallel
Strand 4	A	520	527	parallel
Strand 5	A	555	559	first strand
Strand 6	A	575	577	parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1164	1167	first strand
Strand 2	C	1156	1159	anti-parallel
Strand 3	A	491	493	parallel
Strand 4	A	510	512	parallel
Strand 5	A	531	532	parallel
Strand 6	A	550	552	parallel
Strand 7	A	570	572	parallel
Strand 8	D	61	63	parallel
Strand 9	D	49	54	anti-parallel
Strand 10	D	36	42	anti-parallel
Strand 11	D	95	102	anti-parallel
Strand 12	D	121	123	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1052	1056	first strand
Strand 2	C	1044	1048	anti-parallel
Strand 3	C	1032	1038	anti-parallel
Strand 4	C	951	957	anti-parallel
Strand 5	C	1085	1092	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1014	1017	first strand
Strand 2	C	999	1003	anti-parallel
Strand 3	C	992	996	anti-parallel
Strand 4	C	974	978	anti-parallel
Strand 5	C	1071	1075	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1130	1132	first strand
Strand 2	C	1303	1305	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1138	1142	first strand
Strand 2	C	1149	1153	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1174	1179	first strand
Strand 2	C	1194	1201	anti-parallel
Strand 3	C	1206	1212	anti-parallel
Strand 4	C	1226	1227	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1217	1218	first strand
Strand 2	C	1222	1224	anti-parallel
Strand 3	C	1281	1286	anti-parallel
Strand 4	C	1264	1273	anti-parallel
Strand 5	C	1254	1258	anti-parallel
Strand 6	C	1240	1243	anti-parallel
Strand 7	C	1194	1201	anti-parallel
Strand 8	C	1206	1212	anti-parallel
Strand 9	C	1236	1237	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	81	87	anti-parallel
Strand 4	D	71	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYR