Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FYZ entry

There are 6 chains in PDB entry 9FYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 24	PHE 617
B	SER 24	PHE 617
C	SER 24	PHE 617
D	SER 24	PHE 617
E	THR 25	PHE 617
F	SER 24	PHE 617

There are158 helices in PDB entry 9FYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	115	119	Right-handed 310
Helix 2	AA2	A	132	136	Right-handed 310
Helix 3	AA3	A	140	144	Right-handed 310
Helix 4	AA4	A	166	173	Right-handed alpha
Helix 5	AA5	A	173	181	Right-handed alpha
Helix 6	AA6	A	217	231	Right-handed alpha
Helix 7	AA7	A	248	253	Right-handed alpha
Helix 8	AA8	A	256	265	Right-handed 310
Helix 9	AA9	A	272	277	Right-handed 310
Helix 10	AB1	A	282	292	Right-handed alpha
Helix 11	AB2	A	305	324	Right-handed alpha
Helix 12	AB3	A	332	336	Right-handed 310
Helix 13	AB4	A	337	352	Right-handed alpha
Helix 14	AB5	A	365	372	Right-handed alpha
Helix 15	AB6	A	391	402	Right-handed alpha
Helix 16	AB7	A	413	422	Right-handed alpha
Helix 17	AB8	A	423	426	Right-handed 310
Helix 18	AB9	A	428	430	Right-handed 310
Helix 19	AC1	A	447	453	Right-handed 310
Helix 20	AC2	A	454	467	Right-handed alpha
Helix 21	AC3	A	476	480	Right-handed 310
Helix 22	AC4	A	484	488	Right-handed 310
Helix 23	AC5	A	489	494	Right-handed 310
Helix 24	AC6	A	509	513	Right-handed 310
Helix 25	AC7	A	514	532	Right-handed alpha
Helix 26	AC8	A	534	540	Right-handed alpha
Helix 27	AC9	A	579	585	Right-handed 310
Helix 28	AD1	B	115	119	Right-handed 310
Helix 29	AD2	B	132	136	Right-handed 310
Helix 30	AD3	B	140	144	Right-handed 310
Helix 31	AD4	B	166	173	Right-handed alpha
Helix 32	AD5	B	173	181	Right-handed alpha
Helix 33	AD6	B	217	231	Right-handed alpha
Helix 34	AD7	B	248	253	Right-handed alpha
Helix 35	AD8	B	256	260	Right-handed 310
Helix 36	AD9	B	272	277	Right-handed 310
Helix 37	AE1	B	282	292	Right-handed alpha
Helix 38	AE2	B	305	324	Right-handed alpha
Helix 39	AE3	B	337	352	Right-handed alpha
Helix 40	AE4	B	365	372	Right-handed alpha
Helix 41	AE5	B	391	402	Right-handed alpha
Helix 42	AE6	B	413	422	Right-handed alpha
Helix 43	AE7	B	423	426	Right-handed 310
Helix 44	AE8	B	428	430	Right-handed 310
Helix 45	AE9	B	447	453	Right-handed 310
Helix 46	AF1	B	454	467	Right-handed alpha
Helix 47	AF2	B	476	480	Right-handed 310
Helix 48	AF3	B	484	494	Right-handed 310
Helix 49	AF4	B	509	513	Right-handed 310
Helix 50	AF5	B	514	532	Right-handed alpha
Helix 51	AF6	B	534	540	Right-handed alpha
Helix 52	AF7	B	579	585	Right-handed 310
Helix 53	AF8	C	115	119	Right-handed 310
Helix 54	AF9	C	132	136	Right-handed 310
Helix 55	AG1	C	140	144	Right-handed 310
Helix 56	AG2	C	166	173	Right-handed alpha
Helix 57	AG3	C	173	181	Right-handed alpha
Helix 58	AG4	C	217	231	Right-handed alpha
Helix 59	AG5	C	248	253	Right-handed alpha
Helix 60	AG6	C	256	260	Right-handed 310
Helix 61	AG7	C	261	265	Right-handed 310
Helix 62	AG8	C	272	277	Right-handed 310
Helix 63	AG9	C	282	292	Right-handed alpha
Helix 64	AH1	C	305	324	Right-handed alpha
Helix 65	AH2	C	332	336	Right-handed 310
Helix 66	AH3	C	337	352	Right-handed alpha
Helix 67	AH4	C	365	372	Right-handed alpha
Helix 68	AH5	C	391	402	Right-handed alpha
Helix 69	AH6	C	413	422	Right-handed alpha
Helix 70	AH7	C	423	426	Right-handed 310
Helix 71	AH8	C	428	430	Right-handed 310
Helix 72	AH9	C	447	453	Right-handed 310
Helix 73	AI1	C	454	467	Right-handed alpha
Helix 74	AI2	C	476	480	Right-handed 310
Helix 75	AI3	C	484	494	Right-handed 310
Helix 76	AI4	C	509	513	Right-handed 310
Helix 77	AI5	C	514	532	Right-handed alpha
Helix 78	AI6	C	534	540	Right-handed alpha
Helix 79	AI7	C	579	585	Right-handed 310
Helix 80	AI8	D	115	119	Right-handed 310
Helix 81	AI9	D	132	136	Right-handed 310
Helix 82	AJ1	D	140	144	Right-handed 310
Helix 83	AJ2	D	166	173	Right-handed alpha
Helix 84	AJ3	D	173	181	Right-handed alpha
Helix 85	AJ4	D	217	231	Right-handed alpha
Helix 86	AJ5	D	248	253	Right-handed alpha
Helix 87	AJ6	D	256	265	Right-handed 310
Helix 88	AJ7	D	272	277	Right-handed 310
Helix 89	AJ8	D	282	292	Right-handed alpha
Helix 90	AJ9	D	305	324	Right-handed alpha
Helix 91	AK1	D	332	336	Right-handed 310
Helix 92	AK2	D	337	352	Right-handed alpha
Helix 93	AK3	D	365	372	Right-handed alpha
Helix 94	AK4	D	391	402	Right-handed alpha
Helix 95	AK5	D	413	422	Right-handed alpha
Helix 96	AK6	D	423	426	Right-handed 310
Helix 97	AK7	D	428	430	Right-handed 310
Helix 98	AK8	D	447	453	Right-handed 310
Helix 99	AK9	D	454	467	Right-handed alpha
Helix 100	AL1	D	476	480	Right-handed 310
Helix 101	AL2	D	484	494	Right-handed 310
Helix 102	AL3	D	509	513	Right-handed 310
Helix 103	AL4	D	514	532	Right-handed alpha
Helix 104	AL5	D	534	540	Right-handed alpha
Helix 105	AL6	D	579	585	Right-handed 310
Helix 106	AL7	E	115	119	Right-handed 310
Helix 107	AL8	E	132	136	Right-handed 310
Helix 108	AL9	E	140	144	Right-handed 310
Helix 109	AM1	E	166	173	Right-handed alpha
Helix 110	AM2	E	173	181	Right-handed alpha
Helix 111	AM3	E	217	231	Right-handed alpha
Helix 112	AM4	E	248	253	Right-handed alpha
Helix 113	AM5	E	256	265	Right-handed 310
Helix 114	AM6	E	272	277	Right-handed 310
Helix 115	AM7	E	282	292	Right-handed alpha
Helix 116	AM8	E	305	324	Right-handed alpha
Helix 117	AM9	E	332	336	Right-handed 310
Helix 118	AN1	E	337	352	Right-handed alpha
Helix 119	AN2	E	365	372	Right-handed alpha
Helix 120	AN3	E	391	402	Right-handed alpha
Helix 121	AN4	E	413	422	Right-handed alpha
Helix 122	AN5	E	423	426	Right-handed 310
Helix 123	AN6	E	428	430	Right-handed 310
Helix 124	AN7	E	447	453	Right-handed 310
Helix 125	AN8	E	454	467	Right-handed alpha
Helix 126	AN9	E	476	480	Right-handed 310
Helix 127	AO1	E	484	494	Right-handed 310
Helix 128	AO2	E	514	532	Right-handed alpha
Helix 129	AO3	E	534	540	Right-handed alpha
Helix 130	AO4	E	579	585	Right-handed 310
Helix 131	AO5	F	115	119	Right-handed 310
Helix 132	AO6	F	132	136	Right-handed 310
Helix 133	AO7	F	140	144	Right-handed 310
Helix 134	AO8	F	166	173	Right-handed alpha
Helix 135	AO9	F	173	181	Right-handed alpha
Helix 136	AP1	F	217	231	Right-handed alpha
Helix 137	AP2	F	248	253	Right-handed alpha
Helix 138	AP3	F	256	260	Right-handed 310
Helix 139	AP4	F	261	265	Right-handed 310
Helix 140	AP5	F	272	277	Right-handed 310
Helix 141	AP6	F	282	292	Right-handed alpha
Helix 142	AP7	F	305	324	Right-handed alpha
Helix 143	AP8	F	332	336	Right-handed 310
Helix 144	AP9	F	337	352	Right-handed alpha
Helix 145	AQ1	F	365	372	Right-handed alpha
Helix 146	AQ2	F	391	402	Right-handed alpha
Helix 147	AQ3	F	413	422	Right-handed alpha
Helix 148	AQ4	F	423	426	Right-handed 310
Helix 149	AQ5	F	428	430	Right-handed 310
Helix 150	AQ6	F	447	453	Right-handed 310
Helix 151	AQ7	F	454	467	Right-handed alpha
Helix 152	AQ8	F	476	480	Right-handed 310
Helix 153	AQ9	F	484	488	Right-handed 310
Helix 154	AR1	F	489	494	Right-handed 310
Helix 155	AR2	F	509	513	Right-handed 310
Helix 156	AR3	F	514	532	Right-handed alpha
Helix 157	AR4	F	534	540	Right-handed alpha
Helix 158	AR5	F	579	585	Right-handed 310

There are 38 sheets in PDB entry 9FYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	77	83	anti-parallel
Strand 4	A	65	71	anti-parallel
Strand 5	B	65	71	anti-parallel
Strand 6	B	77	83	anti-parallel
Strand 7	B	42	49	anti-parallel
Strand 8	B	26	30	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	A	101	110	parallel
Strand 3	A	90	98	anti-parallel
Strand 4	A	56	60	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	184	187	parallel
Strand 3	A	234	239	parallel
Strand 4	A	327	330	parallel
Strand 5	A	356	359	parallel
Strand 6	A	388	390	parallel
Strand 7	A	432	435	parallel
Strand 8	A	470	474	parallel
Strand 9	A	128	131	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	207	211	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	541	548	first strand
Strand 2	A	551	558	anti-parallel
Strand 3	A	561	568	anti-parallel
Strand 4	A	612	617	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	577	first strand
Strand 2	A	604	607	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	591	first strand
Strand 2	A	598	600	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	101	110	parallel
Strand 3	B	90	98	anti-parallel
Strand 4	B	56	60	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	184	187	parallel
Strand 3	B	234	239	parallel
Strand 4	B	327	330	parallel
Strand 5	B	356	359	parallel
Strand 6	B	388	390	parallel
Strand 7	B	432	435	parallel
Strand 8	B	470	474	parallel
Strand 9	B	128	131	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	207	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	541	548	first strand
Strand 2	B	551	558	anti-parallel
Strand 3	B	561	568	anti-parallel
Strand 4	B	612	617	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	577	first strand
Strand 2	B	604	607	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	591	first strand
Strand 2	B	598	600	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	30	first strand
Strand 2	C	42	49	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	65	70	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	103	110	parallel
Strand 3	C	90	97	anti-parallel
Strand 4	C	56	60	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	184	187	parallel
Strand 3	C	234	239	parallel
Strand 4	C	327	330	parallel
Strand 5	C	356	359	parallel
Strand 6	C	388	390	parallel
Strand 7	C	432	435	parallel
Strand 8	C	470	474	parallel
Strand 9	C	128	131	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	207	211	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	548	first strand
Strand 2	C	551	558	anti-parallel
Strand 3	C	561	568	anti-parallel
Strand 4	C	612	617	anti-parallel
Strand 5	C	589	592	anti-parallel
Strand 6	C	598	600	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	577	first strand
Strand 2	C	604	607	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	30	first strand
Strand 2	D	42	49	anti-parallel
Strand 3	D	77	83	anti-parallel
Strand 4	D	65	71	anti-parallel
Strand 5	E	65	71	anti-parallel
Strand 6	E	77	83	anti-parallel
Strand 7	E	42	49	anti-parallel
Strand 8	E	26	30	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	101	110	parallel
Strand 3	D	90	98	anti-parallel
Strand 4	D	56	60	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	184	187	parallel
Strand 3	D	234	239	parallel
Strand 4	D	327	330	parallel
Strand 5	D	356	359	parallel
Strand 6	D	388	390	parallel
Strand 7	D	432	435	parallel
Strand 8	D	470	474	parallel
Strand 9	D	128	131	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	207	211	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	541	548	first strand
Strand 2	D	551	558	anti-parallel
Strand 3	D	561	568	anti-parallel
Strand 4	D	612	617	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	574	577	first strand
Strand 2	D	604	607	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	589	591	first strand
Strand 2	D	598	600	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	101	110	parallel
Strand 3	E	90	98	anti-parallel
Strand 4	E	56	60	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	131	first strand
Strand 2	E	184	187	parallel
Strand 3	E	234	239	parallel
Strand 4	E	327	330	parallel
Strand 5	E	356	359	parallel
Strand 6	E	388	390	parallel
Strand 7	E	432	435	parallel
Strand 8	E	470	474	parallel
Strand 9	E	128	131	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	192	first strand
Strand 2	E	207	211	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	541	548	first strand
Strand 2	E	551	558	anti-parallel
Strand 3	E	561	568	anti-parallel
Strand 4	E	612	617	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	574	577	first strand
Strand 2	E	604	607	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	589	591	first strand
Strand 2	E	598	600	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	30	first strand
Strand 2	F	42	49	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	65	70	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	35	first strand
Strand 2	F	103	110	parallel
Strand 3	F	90	96	anti-parallel
Strand 4	F	57	60	anti-parallel

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There are 9 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	131	first strand
Strand 2	F	184	187	parallel
Strand 3	F	234	239	parallel
Strand 4	F	327	330	parallel
Strand 5	F	356	359	parallel
Strand 6	F	388	390	parallel
Strand 7	F	432	435	parallel
Strand 8	F	470	474	parallel
Strand 9	F	128	131	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	192	first strand
Strand 2	F	207	211	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	541	548	first strand
Strand 2	F	551	558	anti-parallel
Strand 3	F	561	568	anti-parallel
Strand 4	F	612	617	anti-parallel
Strand 5	F	589	592	anti-parallel
Strand 6	F	598	600	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	574	577	first strand
Strand 2	F	604	607	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FYZ