Analysis of interatomic Contacts of Structural Units in PDB entry:
9FZ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9FZ9 entry

There are 3 chains in PDB entry 9FZ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	LYS 529
B	SER 3	LYS 529
C	LYS 4	ASN 189

There are 51 helices in PDB entry 9FZ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	60	Right-handed alpha
Helix 2	AA2	A	72	83	Right-handed alpha
Helix 3	AA3	A	100	119	Right-handed alpha
Helix 4	AA4	A	134	142	Right-handed alpha
Helix 5	AA5	A	142	161	Right-handed alpha
Helix 6	AA6	A	196	201	Right-handed alpha
Helix 7	AA7	A	202	215	Right-handed alpha
Helix 8	AA8	A	242	260	Right-handed alpha
Helix 9	AA9	A	273	278	Right-handed 310
Helix 10	AB1	A	287	291	Right-handed 310
Helix 11	AB2	A	308	318	Right-handed alpha
Helix 12	AB3	A	425	429	Right-handed 310
Helix 13	AB4	A	470	474	Right-handed 310
Helix 14	AB5	B	46	60	Right-handed alpha
Helix 15	AB6	B	72	83	Right-handed alpha
Helix 16	AB7	B	100	119	Right-handed alpha
Helix 17	AB8	B	134	142	Right-handed alpha
Helix 18	AB9	B	142	161	Right-handed alpha
Helix 19	AC1	B	196	201	Right-handed alpha
Helix 20	AC2	B	202	215	Right-handed alpha
Helix 21	AC3	B	242	260	Right-handed alpha
Helix 22	AC4	B	273	278	Right-handed 310
Helix 23	AC5	B	287	291	Right-handed 310
Helix 24	AC6	B	308	319	Right-handed alpha
Helix 25	AC7	B	425	429	Right-handed 310
Helix 26	AC8	B	470	474	Right-handed 310
Helix 27	AC9	C	46	60	Right-handed alpha
Helix 28	AD1	C	72	83	Right-handed alpha
Helix 29	AD2	C	100	119	Right-handed alpha
Helix 30	AD3	C	134	142	Right-handed alpha
Helix 31	AD4	C	142	161	Right-handed alpha
Helix 32	AD5	C	196	201	Right-handed alpha
Helix 33	AD6	C	202	215	Right-handed alpha
Helix 34	AD7	C	242	260	Right-handed alpha
Helix 35	AD8	C	273	278	Right-handed 310
Helix 36	AD9	C	287	291	Right-handed 310
Helix 37	AE1	C	308	318	Right-handed alpha
Helix 38	AE2	C	470	474	Right-handed 310
Helix 39	AE3	D	46	60	Right-handed alpha
Helix 40	AE4	D	72	83	Right-handed alpha
Helix 41	AE5	D	100	119	Right-handed alpha
Helix 42	AE6	D	134	142	Right-handed alpha
Helix 43	AE7	D	142	161	Right-handed alpha
Helix 44	AE8	D	196	201	Right-handed alpha
Helix 45	AE9	D	202	215	Right-handed alpha
Helix 46	AF1	D	242	260	Right-handed alpha
Helix 47	AF2	D	273	278	Right-handed 310
Helix 48	AF3	D	287	291	Right-handed 310
Helix 49	AF4	D	308	318	Right-handed alpha
Helix 50	AF5	D	425	429	Right-handed 310
Helix 51	AF6	D	470	474	Right-handed 310

There are 32 sheets in PDB entry 9FZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	13	16	anti-parallel
Strand 3	A	19	20	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	27	first strand
Strand 2	A	64	66	parallel
Strand 3	A	85	89	parallel
Strand 4	A	124	131	parallel
Strand 5	A	166	171	parallel
Strand 6	A	186	189	parallel
Strand 7	A	220	224	parallel
Strand 8	A	264	265	parallel
Strand 9	A	23	27	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	306	307	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	324	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	367	374	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	396	406	parallel
Strand 3	A	381	390	anti-parallel
Strand 4	A	348	353	anti-parallel
Strand 5	A	356	362	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	421	first strand
Strand 2	A	431	439	anti-parallel
Strand 3	A	478	486	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	493	504	anti-parallel
Strand 3	A	450	455	anti-parallel
Strand 4	A	464	468	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	493	504	anti-parallel
Strand 3	A	507	518	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	13	16	anti-parallel
Strand 3	B	19	20	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	27	first strand
Strand 2	B	64	66	parallel
Strand 3	B	85	89	parallel
Strand 4	B	124	131	parallel
Strand 5	B	166	171	parallel
Strand 6	B	186	189	parallel
Strand 7	B	220	224	parallel
Strand 8	B	264	265	parallel
Strand 9	B	23	27	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	306	307	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	324	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	367	374	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	396	406	parallel
Strand 3	B	381	390	anti-parallel
Strand 4	B	348	353	anti-parallel
Strand 5	B	356	362	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	421	first strand
Strand 2	B	431	439	anti-parallel
Strand 3	B	478	486	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	493	504	anti-parallel
Strand 3	B	450	455	anti-parallel
Strand 4	B	464	468	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	493	504	anti-parallel
Strand 3	B	507	518	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	13	16	anti-parallel
Strand 3	C	19	20	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	27	first strand
Strand 2	C	64	66	parallel
Strand 3	C	85	89	parallel
Strand 4	C	124	131	parallel
Strand 5	C	166	171	parallel
Strand 6	C	186	189	parallel
Strand 7	C	220	224	parallel
Strand 8	C	264	265	parallel
Strand 9	C	23	27	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	306	307	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	324	first strand
Strand 2	C	335	342	anti-parallel
Strand 3	C	367	374	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	331	first strand
Strand 2	C	396	406	parallel
Strand 3	C	381	390	anti-parallel
Strand 4	C	348	353	anti-parallel
Strand 5	C	356	362	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	419	first strand
Strand 2	C	431	439	anti-parallel
Strand 3	C	478	486	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	446	first strand
Strand 2	C	493	504	anti-parallel
Strand 3	C	450	455	anti-parallel
Strand 4	C	464	468	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	446	first strand
Strand 2	C	493	504	anti-parallel
Strand 3	C	507	518	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	10	first strand
Strand 2	D	13	16	anti-parallel
Strand 3	D	19	20	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	64	66	parallel
Strand 3	D	85	89	parallel
Strand 4	D	124	131	parallel
Strand 5	D	166	171	parallel
Strand 6	D	186	189	parallel
Strand 7	D	220	224	parallel
Strand 8	D	264	265	parallel
Strand 9	D	23	27	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	296	first strand
Strand 2	D	306	307	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	324	first strand
Strand 2	D	335	342	anti-parallel
Strand 3	D	367	374	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	331	first strand
Strand 2	D	396	406	parallel
Strand 3	D	381	390	anti-parallel
Strand 4	D	348	353	anti-parallel
Strand 5	D	356	362	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	415	421	first strand
Strand 2	D	431	439	anti-parallel
Strand 3	D	478	486	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	493	504	anti-parallel
Strand 3	D	450	455	anti-parallel
Strand 4	D	464	468	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	493	504	anti-parallel
Strand 3	D	507	518	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9FZ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9FZ9