Analysis of interatomic Contacts of Structural Units in PDB entry:
9G01

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G01 entry

There are 4 chains in PDB entry 9G01 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 290
B	LYS 4	ILE 631
C	LYS 4	ILE 631
D	MET 1	MET 708

There are113 helices in PDB entry 9G01. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	30	Right-handed alpha
Helix 2	AA2	A	44	52	Right-handed alpha
Helix 3	AA3	A	57	64	Right-handed alpha
Helix 4	AA4	A	64	71	Right-handed alpha
Helix 5	AA5	A	77	103	Right-handed alpha
Helix 6	AA6	A	116	130	Right-handed alpha
Helix 7	AA7	A	144	158	Right-handed alpha
Helix 8	AA8	A	167	175	Right-handed alpha
Helix 9	AA9	A	191	194	Right-handed 310
Helix 10	AB1	A	195	209	Right-handed alpha
Helix 11	AB2	A	216	228	Right-handed alpha
Helix 12	AB3	A	239	252	Right-handed alpha
Helix 13	AB4	A	277	286	Right-handed alpha
Helix 14	AB5	B	9	23	Right-handed alpha
Helix 15	AB6	B	26	35	Right-handed alpha
Helix 16	AB7	B	38	44	Right-handed alpha
Helix 17	AB8	B	73	106	Right-handed alpha
Helix 18	AB9	B	117	128	Right-handed alpha
Helix 19	AC1	B	136	154	Right-handed alpha
Helix 20	AC2	B	166	177	Right-handed alpha
Helix 21	AC3	B	182	194	Right-handed alpha
Helix 22	AC4	B	201	218	Right-handed alpha
Helix 23	AC5	B	219	233	Right-handed alpha
Helix 24	AC6	B	243	247	Right-handed 310
Helix 25	AC7	B	260	272	Right-handed alpha
Helix 26	AC8	B	273	283	Right-handed alpha
Helix 27	AC9	B	294	305	Right-handed alpha
Helix 28	AD1	B	311	313	Right-handed 310
Helix 29	AD2	B	314	321	Right-handed alpha
Helix 30	AD3	B	336	343	Right-handed alpha
Helix 31	AD4	B	370	385	Right-handed alpha
Helix 32	AD5	B	386	389	Right-handed 310
Helix 33	AD6	B	390	394	Right-handed 310
Helix 34	AD7	B	408	417	Right-handed alpha
Helix 35	AD8	B	418	420	Right-handed 310
Helix 36	AD9	B	430	440	Right-handed alpha
Helix 37	AE1	B	459	472	Right-handed alpha
Helix 38	AE2	B	480	490	Right-handed alpha
Helix 39	AE3	B	494	501	Right-handed alpha
Helix 40	AE4	B	502	513	Right-handed alpha
Helix 41	AE5	B	525	541	Right-handed alpha
Helix 42	AE6	B	543	547	Right-handed 310
Helix 43	AE7	B	558	571	Right-handed alpha
Helix 44	AE8	B	586	595	Right-handed alpha
Helix 45	AE9	B	596	602	Right-handed alpha
Helix 46	AF1	B	610	630	Right-handed alpha
Helix 47	AF2	C	9	23	Right-handed alpha
Helix 48	AF3	C	26	35	Right-handed alpha
Helix 49	AF4	C	38	44	Right-handed alpha
Helix 50	AF5	C	73	106	Right-handed alpha
Helix 51	AF6	C	117	128	Right-handed alpha
Helix 52	AF7	C	136	154	Right-handed alpha
Helix 53	AF8	C	166	177	Right-handed alpha
Helix 54	AF9	C	182	194	Right-handed alpha
Helix 55	AG1	C	201	218	Right-handed alpha
Helix 56	AG2	C	219	233	Right-handed alpha
Helix 57	AG3	C	243	247	Right-handed 310
Helix 58	AG4	C	260	272	Right-handed alpha
Helix 59	AG5	C	273	283	Right-handed alpha
Helix 60	AG6	C	294	305	Right-handed alpha
Helix 61	AG7	C	311	313	Right-handed 310
Helix 62	AG8	C	314	321	Right-handed alpha
Helix 63	AG9	C	336	344	Right-handed alpha
Helix 64	AH1	C	370	385	Right-handed alpha
Helix 65	AH2	C	386	389	Right-handed 310
Helix 66	AH3	C	390	394	Right-handed 310
Helix 67	AH4	C	408	417	Right-handed alpha
Helix 68	AH5	C	418	420	Right-handed 310
Helix 69	AH6	C	430	440	Right-handed alpha
Helix 70	AH7	C	459	472	Right-handed alpha
Helix 71	AH8	C	480	490	Right-handed alpha
Helix 72	AH9	C	494	501	Right-handed alpha
Helix 73	AI1	C	502	513	Right-handed alpha
Helix 74	AI2	C	525	541	Right-handed alpha
Helix 75	AI3	C	543	547	Right-handed 310
Helix 76	AI4	C	558	572	Right-handed alpha
Helix 77	AI5	C	586	595	Right-handed alpha
Helix 78	AI6	C	596	602	Right-handed alpha
Helix 79	AI7	C	610	630	Right-handed alpha
Helix 80	AI8	D	2	30	Right-handed alpha
Helix 81	AI9	D	44	52	Right-handed alpha
Helix 82	AJ1	D	57	64	Right-handed alpha
Helix 83	AJ2	D	64	71	Right-handed alpha
Helix 84	AJ3	D	77	103	Right-handed alpha
Helix 85	AJ4	D	116	123	Right-handed alpha
Helix 86	AJ5	D	123	129	Right-handed alpha
Helix 87	AJ6	D	144	158	Right-handed alpha
Helix 88	AJ7	D	167	175	Right-handed alpha
Helix 89	AJ8	D	191	194	Right-handed 310
Helix 90	AJ9	D	195	209	Right-handed alpha
Helix 91	AK1	D	216	228	Right-handed alpha
Helix 92	AK2	D	239	252	Right-handed alpha
Helix 93	AK3	D	277	286	Right-handed alpha
Helix 94	AK4	D	302	308	Right-handed 310
Helix 95	AK5	D	311	313	Right-handed 310
Helix 96	AK6	D	349	353	Right-handed 310
Helix 97	AK7	D	374	376	Right-handed 310
Helix 98	AK8	D	377	391	Right-handed alpha
Helix 99	AK9	D	410	415	Right-handed alpha
Helix 100	AL1	D	419	434	Right-handed alpha
Helix 101	AL2	D	448	460	Right-handed alpha
Helix 102	AL3	D	460	473	Right-handed alpha
Helix 103	AL4	D	487	491	Right-handed 310
Helix 104	AL5	D	511	522	Right-handed alpha
Helix 105	AL6	D	544	554	Right-handed alpha
Helix 106	AL7	D	606	612	Right-handed alpha
Helix 107	AL8	D	627	631	Right-handed 310
Helix 108	AL9	D	641	644	Right-handed 310
Helix 109	AM1	D	650	666	Right-handed alpha
Helix 110	AM2	D	667	669	Right-handed 310
Helix 111	AM3	D	673	677	Right-handed 310
Helix 112	AM4	D	686	698	Right-handed alpha
Helix 113	AM5	D	699	704	Right-handed alpha

There are 15 sheets in PDB entry 9G01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	161	165	parallel
Strand 3	A	135	140	parallel
Strand 4	A	230	235	parallel
Strand 5	A	256	258	parallel
Strand 6	A	269	271	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	242	first strand
Strand 2	B	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	288	293	parallel
Strand 3	B	252	257	parallel
Strand 4	B	326	329	parallel
Strand 5	B	348	351	parallel
Strand 6	B	362	363	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	521	first strand
Strand 2	B	474	479	parallel
Strand 3	B	444	448	parallel
Strand 4	B	549	553	parallel
Strand 5	B	574	577	parallel
Strand 6	B	605	607	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	242	first strand
Strand 2	C	401	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	310	first strand
Strand 2	C	288	293	parallel
Strand 3	C	252	257	parallel
Strand 4	C	326	329	parallel
Strand 5	C	348	351	parallel
Strand 6	C	362	363	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	521	first strand
Strand 2	C	474	479	parallel
Strand 3	C	444	448	parallel
Strand 4	C	549	553	parallel
Strand 5	C	574	577	parallel
Strand 6	C	605	607	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	189	first strand
Strand 2	D	161	165	parallel
Strand 3	D	135	140	parallel
Strand 4	D	230	235	parallel
Strand 5	D	256	258	parallel
Strand 6	D	269	271	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	359	first strand
Strand 2	D	315	320	parallel
Strand 3	D	403	409	anti-parallel
Strand 4	D	395	400	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	332	first strand
Strand 2	D	362	369	parallel
Strand 3	D	440	446	anti-parallel
Strand 4	D	343	346	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	497	499	first strand
Strand 2	D	481	485	anti-parallel
Strand 3	D	527	531	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	537	first strand
Strand 2	D	542	543	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	626	first strand
Strand 2	D	579	584	anti-parallel
Strand 3	D	589	594	anti-parallel
Strand 4	D	646	648	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G01

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G01