Analysis of interatomic Contacts of Structural Units in PDB entry:
9G04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9G04 entry

There are 2 chains in PDB entry 9G04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	LYS 1037
B	ARG 2	LYS 1037

There are 90 helices in PDB entry 9G04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	27	Right-handed alpha
Helix 2	AA2	A	38	45	Right-handed alpha
Helix 3	AA3	A	46	57	Right-handed alpha
Helix 4	AA4	A	57	69	Right-handed alpha
Helix 5	AA5	A	76	93	Right-handed alpha
Helix 6	AA6	A	128	143	Right-handed alpha
Helix 7	AA7	A	144	146	Right-handed 310
Helix 8	AA8	A	184	194	Right-handed alpha
Helix 9	AA9	A	195	197	Right-handed 310
Helix 10	AB1	A	200	211	Right-handed alpha
Helix 11	AB2	A	215	229	Right-handed alpha
Helix 12	AB3	A	244	257	Right-handed alpha
Helix 13	AB4	A	259	279	Right-handed alpha
Helix 14	AB5	A	284	299	Right-handed alpha
Helix 15	AB6	A	321	337	Right-handed alpha
Helix 16	AB7	A	338	340	Right-handed 310
Helix 17	AB8	A	344	359	Right-handed alpha
Helix 18	AB9	A	366	370	Right-handed alpha
Helix 19	AC1	A	400	418	Right-handed alpha
Helix 20	AC2	A	425	431	Right-handed alpha
Helix 21	AC3	A	438	442	Right-handed 310
Helix 22	AC4	A	481	485	Right-handed 310
Helix 23	AC5	A	490	506	Right-handed alpha
Helix 24	AC6	A	522	529	Right-handed 310
Helix 25	AC7	A	554	556	Right-handed 310
Helix 26	AC8	A	587	591	Right-handed 310
Helix 27	AC9	A	592	603	Right-handed alpha
Helix 28	AD1	A	613	618	Right-handed alpha
Helix 29	AD2	A	655	669	Right-handed alpha
Helix 30	AD3	A	687	701	Right-handed alpha
Helix 31	AD4	A	784	789	Right-handed alpha
Helix 32	AD5	A	789	801	Right-handed alpha
Helix 33	AD6	A	826	847	Right-handed alpha
Helix 34	AD7	A	869	895	Right-handed alpha
Helix 35	AD8	A	900	917	Right-handed alpha
Helix 36	AD9	A	919	927	Right-handed alpha
Helix 37	AE1	A	948	952	Right-handed alpha
Helix 38	AE2	A	953	958	Right-handed alpha
Helix 39	AE3	A	963	974	Right-handed alpha
Helix 40	AE4	A	976	990	Right-handed alpha
Helix 41	AE5	A	995	1013	Right-handed alpha
Helix 42	AE6	A	1015	1033	Right-handed alpha
Helix 43	AE7	A	1034	1036	Right-handed 310
Helix 44	AE8	B	20	27	Right-handed alpha
Helix 45	AE9	B	38	45	Right-handed alpha
Helix 46	AF1	B	46	57	Right-handed alpha
Helix 47	AF2	B	57	69	Right-handed alpha
Helix 48	AF3	B	76	93	Right-handed alpha
Helix 49	AF4	B	128	144	Right-handed alpha
Helix 50	AF5	B	184	194	Right-handed alpha
Helix 51	AF6	B	195	197	Right-handed 310
Helix 52	AF7	B	200	211	Right-handed alpha
Helix 53	AF8	B	215	229	Right-handed alpha
Helix 54	AF9	B	244	257	Right-handed alpha
Helix 55	AG1	B	259	279	Right-handed alpha
Helix 56	AG2	B	284	299	Right-handed alpha
Helix 57	AG3	B	320	337	Right-handed alpha
Helix 58	AG4	B	338	340	Right-handed 310
Helix 59	AG5	B	344	359	Right-handed alpha
Helix 60	AG6	B	366	370	Right-handed alpha
Helix 61	AG7	B	400	418	Right-handed alpha
Helix 62	AG8	B	425	431	Right-handed alpha
Helix 63	AG9	B	438	442	Right-handed 310
Helix 64	AH1	B	456	460	Right-handed 310
Helix 65	AH2	B	481	485	Right-handed 310
Helix 66	AH3	B	490	506	Right-handed alpha
Helix 67	AH4	B	522	529	Right-handed 310
Helix 68	AH5	B	548	552	Right-handed 310
Helix 69	AH6	B	554	556	Right-handed 310
Helix 70	AH7	B	587	591	Right-handed 310
Helix 71	AH8	B	592	603	Right-handed alpha
Helix 72	AH9	B	613	618	Right-handed alpha
Helix 73	AI1	B	655	669	Right-handed alpha
Helix 74	AI2	B	687	701	Right-handed alpha
Helix 75	AI3	B	779	781	Right-handed 310
Helix 76	AI4	B	782	789	Right-handed alpha
Helix 77	AI5	B	789	801	Right-handed alpha
Helix 78	AI6	B	826	847	Right-handed alpha
Helix 79	AI7	B	870	894	Right-handed alpha
Helix 80	AI8	B	900	917	Right-handed alpha
Helix 81	AI9	B	919	928	Right-handed alpha
Helix 82	AJ1	B	937	942	Right-handed 310
Helix 83	AJ2	B	943	951	Right-handed alpha
Helix 84	AJ3	B	953	958	Right-handed alpha
Helix 85	AJ4	B	963	974	Right-handed alpha
Helix 86	AJ5	B	976	990	Right-handed alpha
Helix 87	AJ6	B	995	1013	Right-handed alpha
Helix 88	AJ7	B	1015	1025	Right-handed alpha
Helix 89	AJ8	B	1026	1033	Right-handed alpha
Helix 90	AJ9	B	1034	1036	Right-handed 310

There are 20 sheets in PDB entry 9G04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	730	737	anti-parallel
Strand 3	A	445	454	anti-parallel
Strand 4	A	464	474	anti-parallel
Strand 5	A	632	635	parallel
Strand 6	A	626	629	anti-parallel
Strand 7	A	421	423	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	313	319	anti-parallel
Strand 3	A	101	109	parallel
Strand 4	A	11	16	anti-parallel
Strand 5	A	730	737	anti-parallel
Strand 6	A	445	454	anti-parallel
Strand 7	A	717	718	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	127	first strand
Strand 2	A	305	310	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	148	151	anti-parallel
Strand 3	A	232	234	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	161	163	anti-parallel
Strand 3	A	181	182	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	558	563	anti-parallel
Strand 3	A	566	571	anti-parallel
Strand 4	A	576	581	anti-parallel
Strand 5	A	511	518	parallel
Strand 6	A	537	541	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	624	first strand
Strand 2	A	638	640	anti-parallel
Strand 3	A	708	711	anti-parallel
Strand 4	A	673	676	anti-parallel
Strand 5	A	681	684	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	722	first strand
Strand 2	A	725	727	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	765	first strand
Strand 2	A	858	859	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	806	813	first strand
Strand 2	A	817	824	anti-parallel
Strand 3	A	771	777	anti-parallel
Strand 4	A	853	855	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	730	737	anti-parallel
Strand 3	B	445	454	anti-parallel
Strand 4	B	464	474	anti-parallel
Strand 5	B	632	635	parallel
Strand 6	B	626	629	anti-parallel
Strand 7	B	421	423	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	313	319	anti-parallel
Strand 3	B	101	109	parallel
Strand 4	B	11	16	anti-parallel
Strand 5	B	730	737	anti-parallel
Strand 6	B	445	454	anti-parallel
Strand 7	B	717	718	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	127	first strand
Strand 2	B	305	310	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	148	151	anti-parallel
Strand 3	B	232	234	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	163	anti-parallel
Strand 3	B	181	182	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	558	563	anti-parallel
Strand 3	B	566	571	anti-parallel
Strand 4	B	576	581	anti-parallel
Strand 5	B	511	518	parallel
Strand 6	B	537	541	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	624	first strand
Strand 2	B	638	640	anti-parallel
Strand 3	B	708	711	anti-parallel
Strand 4	B	673	676	anti-parallel
Strand 5	B	681	684	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	722	first strand
Strand 2	B	725	727	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	764	765	first strand
Strand 2	B	858	859	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	806	813	first strand
Strand 2	B	817	824	anti-parallel
Strand 3	B	771	777	anti-parallel
Strand 4	B	853	855	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9G04

Analysis of interatomic Contacts of Structural Units in PDB entry:
9G04