Analysis of interatomic Contacts of Structural Units in PDB entry:
9G0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G0J entry

There are 2 chains in PDB entry 9G0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 21SER 235
B
 GLY 29ALA 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9G0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
60 72Right-handed alpha
Helix 5
AA5
A
75 85Right-handed alpha
Helix 6
AA6
A
95 106Right-handed 310
Helix 7
AA7
A
119 123Right-handed 310
Helix 8
AA8
A
149 163Right-handed alpha
Helix 9
AA9
A
166 169Right-handed 310
Helix 10
AB1
A
170 185Right-handed alpha
Helix 11
AB2
A
188 194Right-handed alpha
Helix 12
AB3
A
194 209Right-handed alpha
Helix 13
AB4
A
209 220Right-handed alpha
Helix 14
AB5
A
220 229Right-handed alpha
Helix 15
AB6
A
230 234Right-handed 310
Helix 16
AB7
B
33 35Right-handed 310
Helix 17
AB8
B
44 51Right-handed alpha
Helix 18
AB9
B
60 72Right-handed alpha
Helix 19
AC1
B
75 85Right-handed alpha
Helix 20
AC2
B
95 106Right-handed 310
Helix 21
AC3
B
119 123Right-handed 310
Helix 22
AC4
B
149 163Right-handed alpha
Helix 23
AC5
B
166 169Right-handed 310
Helix 24
AC6
B
170 185Right-handed alpha
Helix 25
AC7
B
188 194Right-handed alpha
Helix 26
AC8
B
194 209Right-handed alpha
Helix 27
AC9
B
209 220Right-handed alpha
Helix 28
AD1
B
220 230Right-handed alpha
Helix 29
AD2
B
231 233Right-handed 310
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There are 2 sheets in PDB entry 9G0J. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
52 54anti-parallel
Strand 3
A
88 92parallel
Strand 4
A
131 135parallel
Strand 5
A
125 126anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
52 54anti-parallel
Strand 3
B
88 92parallel
Strand 4
B
131 135parallel
Strand 5
B
125 126anti-parallel
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