Analysis of interatomic Contacts of Structural Units in PDB entry:
9G2S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G2S entry

There are 2 chains in PDB entry 9G2S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 318ARG 889
B
 ILE 2ALA 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 9G2S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
318 323Right-handed alpha
Helix 2
AA2
A
326 360Right-handed alpha
Helix 3
AA3
A
363 366Right-handed 310
Helix 4
AA4
A
367 378Right-handed alpha
Helix 5
AA5
A
379 412Right-handed alpha
Helix 6
AA6
A
415 423Right-handed alpha
Helix 7
AA7
A
423 432Right-handed alpha
Helix 8
AA8
A
432 438Right-handed alpha
Helix 9
AA9
A
438 444Right-handed alpha
Helix 10
AB1
A
444 467Right-handed alpha
Helix 11
AB2
A
467 516Right-handed alpha
Helix 12
AB3
A
516 523Right-handed alpha
Helix 13
AB4
A
524 529Right-handed alpha
Helix 14
AB5
A
529 561Right-handed alpha
Helix 15
AB6
A
561 579Right-handed alpha
Helix 16
AB7
A
583 586Right-handed 310
Helix 17
AB8
A
587 594Right-handed alpha
Helix 18
AB9
A
597 626Right-handed alpha
Helix 19
AC1
A
692 702Right-handed alpha
Helix 20
AC2
A
722 728Right-handed alpha
Helix 21
AC3
A
743 748Right-handed alpha
Helix 22
AC4
A
756 767Right-handed alpha
Helix 23
AC5
A
769 776Right-handed alpha
Helix 24
AC6
A
778 782Right-handed 310
Helix 25
AC7
A
791 807Right-handed alpha
Helix 26
AC8
A
821 836Right-handed alpha
Helix 27
AC9
A
847 851Right-handed 310
Helix 28
AD1
A
870 878Right-handed alpha
Helix 29
AD2
A
879 889Right-handed alpha
Helix 30
AD3
B
3 9Right-handed alpha
Helix 31
AD4
B
10 12Right-handed 310
Helix 32
AD5
B
13 37Right-handed alpha
Helix 33
AD6
B
37 46Right-handed alpha
Helix 34
AD7
B
49 51Right-handed 310
Helix 35
AD8
B
52 97Right-handed alpha
Helix 36
AD9
B
98 100Right-handed 310
Helix 37
AE1
B
101 105Right-handed 310
Helix 38
AE2
B
106 119Right-handed alpha
Helix 39
AE3
B
121 126Right-handed alpha
Helix 40
AE4
B
126 131Right-handed alpha
Helix 41
AE5
B
131 150Right-handed alpha
Helix 42
AE6
B
153 178Right-handed alpha
Helix 43
AE7
B
178 202Right-handed alpha
Helix 44
AE8
B
202 209Right-handed alpha
Helix 45
AE9
B
217 237Right-handed alpha
Helix 46
AF1
B
237 265Right-handed alpha
Helix 47
AF2
B
269 294Right-handed alpha
Helix 48
AF3
B
295 312Right-handed alpha
Helix 49
AF4
B
370 378Right-handed alpha
Helix 50
AF5
B
399 405Right-handed alpha
Helix 51
AF6
B
421 426Right-handed alpha
Helix 52
AF7
B
433 444Right-handed alpha
Helix 53
AF8
B
446 451Right-handed alpha
Helix 54
AF9
B
455 458Right-handed 310
Helix 55
AG1
B
469 484Right-handed alpha
Helix 56
AG2
B
499 512Right-handed alpha
Helix 57
AG3
B
525 530Right-handed 310
Helix 58
AG4
B
548 556Right-handed alpha
Helix 59
AG5
B
557 564Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9G2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
667 677first strand
Strand 2
A
654 664anti-parallel
Strand 3
A
708 713anti-parallel
Strand 4
A
716 717anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 733first strand
Strand 2
A
810 814parallel
Strand 3
A
840 844parallel
Strand 4
A
682 686parallel
Strand 5
A
856 861parallel
Strand 6
A
864 869anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 353first strand
Strand 2
B
332 341anti-parallel
Strand 3
B
385 390anti-parallel
Strand 4
B
393 394anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 410first strand
Strand 2
B
488 492parallel
Strand 3
B
518 522parallel
Strand 4
B
359 363parallel
Strand 5
B
534 538parallel
Strand 6
B
543 547anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 420first strand
Strand 2
B
460 461anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il