Analysis of interatomic Contacts of Structural Units in PDB entry:
9G3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G3D entry

There are 4 chains in PDB entry 9G3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 6LEU 393
B
 PHE 2ASP 394
C
 GLN 7ALA 121
D
 VAL 8ALA 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9G3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 28Right-handed alpha
Helix 2
AA2
A
29 40Right-handed alpha
Helix 3
AA3
A
48 53Right-handed 310
Helix 4
AA4
A
54 79Right-handed alpha
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
A
88 125Right-handed alpha
Helix 7
AA7
A
131 175Right-handed alpha
Helix 8
AA8
A
177 182Right-handed alpha
Helix 9
AA9
A
186 226Right-handed alpha
Helix 10
AB1
A
227 230Right-handed 310
Helix 11
AB2
A
241 262Right-handed alpha
Helix 12
AB3
A
263 288Right-handed alpha
Helix 13
AB4
A
294 345Right-handed alpha
Helix 14
AB5
A
348 392Right-handed alpha
Helix 15
AB6
B
8 28Right-handed alpha
Helix 16
AB7
B
33 40Right-handed alpha
Helix 17
AB8
B
50 53Right-handed 310
Helix 18
AB9
B
54 79Right-handed alpha
Helix 19
AC1
B
83 88Right-handed alpha
Helix 20
AC2
B
88 125Right-handed alpha
Helix 21
AC3
B
131 175Right-handed alpha
Helix 22
AC4
B
177 182Right-handed alpha
Helix 23
AC5
B
186 191Right-handed alpha
Helix 24
AC6
B
192 227Right-handed alpha
Helix 25
AC7
B
228 230Right-handed 310
Helix 26
AC8
B
241 262Right-handed alpha
Helix 27
AC9
B
263 290Right-handed alpha
Helix 28
AD1
B
294 330Right-handed alpha
Helix 29
AD2
B
332 345Right-handed alpha
Helix 30
AD3
B
348 392Right-handed alpha
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There are 8 sheets in PDB entry 9G3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 11first strand
Strand 2
C
29 31anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
119 120parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 27first strand
Strand 2
C
84 89anti-parallel
Strand 3
C
74 79anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
51 57anti-parallel
Strand 3
C
40 45anti-parallel
Strand 4
C
99 105anti-parallel
Strand 5
C
109 111anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 66first strand
Strand 2
C
51 57anti-parallel
Strand 3
C
40 45anti-parallel
Strand 4
C
99 105anti-parallel
Strand 5
C
115 116anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 19first strand
Strand 2
D
115 120parallel
Strand 3
D
98 105anti-parallel
Strand 4
D
40 45anti-parallel
Strand 5
D
51 57anti-parallel
Strand 6
D
64 66anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 19first strand
Strand 2
D
115 120parallel
Strand 3
D
98 105anti-parallel
Strand 4
D
109 111anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 27first strand
Strand 2
D
85 90anti-parallel
Strand 3
D
75 78anti-parallel
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