Analysis of interatomic Contacts of Structural Units in PDB entry:
9G3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9G3E entry

There are 4 chains in PDB entry 9G3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2ASP 394
B
 PHE 2ASP 394
C
 VAL 8ALA 121
D
 GLN 7ALA 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9G3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 29Right-handed alpha
Helix 2
AA2
A
30 40Right-handed alpha
Helix 3
AA3
A
48 53Right-handed 310
Helix 4
AA4
A
54 79Right-handed alpha
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
A
88 125Right-handed alpha
Helix 7
AA7
A
130 177Right-handed alpha
Helix 8
AA8
A
177 182Right-handed alpha
Helix 9
AA9
A
186 227Right-handed alpha
Helix 10
AB1
A
228 230Right-handed 310
Helix 11
AB2
A
241 261Right-handed alpha
Helix 12
AB3
A
264 286Right-handed alpha
Helix 13
AB4
A
294 337Right-handed alpha
Helix 14
AB5
A
338 345Right-handed alpha
Helix 15
AB6
A
348 394Right-handed alpha
Helix 16
AB7
B
8 29Right-handed alpha
Helix 17
AB8
B
30 40Right-handed alpha
Helix 18
AB9
B
48 53Right-handed 310
Helix 19
AC1
B
54 79Right-handed alpha
Helix 20
AC2
B
83 125Right-handed alpha
Helix 21
AC3
B
130 177Right-handed alpha
Helix 22
AC4
B
177 182Right-handed alpha
Helix 23
AC5
B
186 227Right-handed alpha
Helix 24
AC6
B
228 230Right-handed 310
Helix 25
AC7
B
241 263Right-handed alpha
Helix 26
AC8
B
263 284Right-handed alpha
Helix 27
AC9
B
288 292Right-handed 310
Helix 28
AD1
B
294 337Right-handed alpha
Helix 29
AD2
B
338 345Right-handed alpha
Helix 30
AD3
B
348 394Right-handed alpha
Helix 31
AD4
D
93 97Right-handed 310
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There are 6 sheets in PDB entry 9G3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
23 29anti-parallel
Strand 3
C
84 90anti-parallel
Strand 4
C
74 79anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
115 120parallel
Strand 3
C
98 105anti-parallel
Strand 4
C
40 45anti-parallel
Strand 5
C
51 57anti-parallel
Strand 6
C
64 66anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
115 120parallel
Strand 3
C
98 105anti-parallel
Strand 4
C
109 111anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
24 29anti-parallel
Strand 3
D
84 89anti-parallel
Strand 4
D
74 78anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 18first strand
Strand 2
D
115 119parallel
Strand 3
D
98 105anti-parallel
Strand 4
D
40 45anti-parallel
Strand 5
D
51 57anti-parallel
Strand 6
D
64 66anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 18first strand
Strand 2
D
115 119parallel
Strand 3
D
98 105anti-parallel
Strand 4
D
109 111anti-parallel
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